PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090281.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

YABBY

Protein Properties

Length: 189aa MW: 21170.1 Da PI: 8.7046

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	214.9	2.5e-66	2	159	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstsl.fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 + sse+vCyv+C fCntilavsvP +s+ +++vtvrCGhC++llsvn+ + l ++ ++ +++++++ +es +s XP_011090281.1 2 SAEMSSERVCYVHCHFCNTILAVSVPCSSMlSSIVTVRCGHCANLLSVNIGALLHSLHLQDF-----QQ-------PQKQQTTVEAAWKESIGSS 84 56789********************997257**************99999887774.....22.......2222222222222222222 PP YABBY 96 vssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++ + + ++e p++ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWah+P+ihfgl XP_011090281.1 85 SKCNMFgPLQPQHEQPKMAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHLPHIHFGL 159 22223337788999999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.7E-70	6	159	IPR006780	YABBY protein
SuperFamily	SSF47095	8.38E-9	100	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-5	107	153	IPR009071	High mobility group box domain
CDD	cd01390	1.14E-5	113	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSAEMSSERV CYVHCHFCNT ILAVSVPCSS MLSSIVTVRC GHCANLLSVN IGALLHSLHL 60 QDFQQPQKQQ TTVEAAWKES IGSSSKCNMF GPLQPQHEQP KMAPIRPPEK RQRVPSAYNR 120 FIKEEIQRIK ASNPEISHRE AFSTAAKNWA HLPHIHFGLK HEANKQAKLD HNSSVAAGDQ 180 RSQESLAFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090281.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090281.1	1e-140	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	3e-71	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	Q6SRZ8	2e-93	Q6SRZ8_ANTMA; YABBY2-like transcription factor YAB2
STRING	XP_006487832.1	7e-85	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-69	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]