PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090283.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

YABBY

Protein Properties

Length: 179aa MW: 20072.9 Da PI: 9.6221

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	175.3	3.7e-54	4	149	14	170
YABBY 14 qCnfCntilavsvPstsl.fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.sened 106 +C+ vsvP +s+ +++vtvrCGhC++llsvn+ + l ++ ++ +++++++ +es +s + +++ + + + XP_011090283.1 4 HCSLNYVTRTVSVPCSSMlSSIVTVRCGHCANLLSVNIGALLHSLHLQDF-----QQ-------PQKQQTTVEAAWKESIGSSSKCNMFgPLQPQ 86 6777777789**9997257**************99999887774.....22.......2222222222222222222222233377889 PP YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e p++ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWah+P+ihfgl XP_011090283.1 87 HEQPKMAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHLPHIHFGL 149 99999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.4E-58	4	149	IPR006780	YABBY protein
SuperFamily	SSF47095	7.33E-9	89	143	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.6E-6	97	143	IPR009071	High mobility group box domain
CDD	cd01390	9.81E-6	103	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MLPHCSLNYV TRTVSVPCSS MLSSIVTVRC GHCANLLSVN IGALLHSLHL QDFQQPQKQQ 60 TTVEAAWKES IGSSSKCNMF GPLQPQHEQP KMAPIRPPEK RQRVPSAYNR FIKEEIQRIK 120 ASNPEISHRE AFSTAAKNWA HLPHIHFGLK HEANKQAKLD HNSSVAAGDQ RSQESLAFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090283.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090283.1	1e-132	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	1e-57	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	Q6SRZ8	1e-79	Q6SRZ8_ANTMA; YABBY2-like transcription factor YAB2
STRING	Migut.D02379.1.p	5e-72	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-56	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]