PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090405.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SRS

Protein Properties

Length: 318aa MW: 34149.7 Da PI: 7.9254

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219	1e-67	90	246	2	155
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla..aasskaaasa...aeaaskrkrelkskkqsalsstkl 91 r g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvp+akrrerqqq++ a+++++ +++ +e + kr+re + + +++l +t++ XP_011090405.1 90 RGGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPVAKRRERQQQQQlaALQQNQRQENkqeRETSVKRQRE-NPSPSNSLVCTRI 183 56889********************************************776651044444444444434445555555.4888999999999 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvs.svddgeeelaYqtavsigGhvfkGiLydqGleek 155 ++++s le ++P+evs+eavfrcvrvs +vdd+e+++aYqtavsi GhvfkG+LydqG+e++ XP_011090405.1 184 PTTTSG--LELGNFPSEVSAEAVFRCVRVSgAVDDAENQYAYQTAVSICGHVFKGLLYDQGTENQ 246 998765..88899************8479**************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-64	93	244	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.6E-27	95	137	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.3E-25	195	242	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAGFFSLGGG GGRGRGISNS NPDQETTGHH NPSSEINPES WFLFRNEEIH HQYRGFELWQ 60 PLQQPHHQVG GNPLQDLYAS AGGLAVGPSR GGGISCQDCG NQAKKDCAHM RCRTCCKSRG 120 FQCQTHVKST WVPVAKRRER QQQQQLAALQ QNQRQENKQE RETSVKRQRE NPSPSNSLVC 180 TRIPTTTSGL ELGNFPSEVS AEAVFRCVRV SGAVDDAENQ YAYQTAVSIC GHVFKGLLYD 240 QGTENQYMAA GETSSGGGSV SAGVQQLNLI TGTSATATSN PAGGGGGSSV SPFLDPSLFP 300 APINSFMAGT QFFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090405.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ071393	2e-56	KJ071393.1 Sesamum indicum clone TilSSR_42594 microsatellite Sesame_42594 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090405.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	2e-93	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2Z7B6J4	1e-135	A0A2Z7B6J4_9LAMI; Lateral root primordium protein-related
STRING	Migut.L00031.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-69	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]