PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090475.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 519aa    MW: 57064.7 Da    PI: 5.0181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00045174123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    + C+ C++sFs+   L  H+++ H
  XP_011090475.1 51 HYCKECNRSFSSGKALGGHMSSaH 74
                    68******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-54973No hitNo description
SMARTSM003550.215174IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-95174IPR007087Zinc finger, C2H2
PROSITE profilePS501579.665179IPR007087Zinc finger, C2H2
PROSITE patternPS0002805374IPR007087Zinc finger, C2H2
SuperFamilySSF576672.69E-5106133No hitNo description
SMARTSM003550.2111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951111138IPR007087Zinc finger, C2H2
PfamPF139120.002113135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7382404No hitNo description
PROSITE profilePS501578.787382409IPR007087Zinc finger, C2H2
SMARTSM003556.4382404IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-7382404IPR007087Zinc finger, C2H2
PROSITE patternPS000280384404IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7448475No hitNo description
PROSITE profilePS5015710.471453480IPR007087Zinc finger, C2H2
SMARTSM003550.099453475IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-11453477IPR007087Zinc finger, C2H2
PROSITE patternPS000280455475IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEDERGGSEV PPPNGRIRVK LKFPRMVPEE EEDAAVEAEA EIGLGEEIKT HYCKECNRSF  60
SSGKALGGHM SSAHVQANKD QSLKKLKSRT KSQDKGSGSG SGSGSGSAVE NSCVLCGRGF  120
QSKKSLYGHM RCHPEREWRG MAPPKMEFTE GSSEPEFEDI GPNQEDGYGG DYDQIDSGPK  180
EAPMAELDSN LKGWTRRAKR GRGPLKPVSD SPPALSFPQD EEVIVAVHQL IRLLETKRNV  240
EEVEDMGSNS SAPQEPEVQI ETLGHSKKQK LDSPGPQLEF KKPENQSSLE IIERDQATDH  300
DHPVRSNNDK GKEKTDSNAA LLPDYIDSDN EICITAMTEL KNNNEAGDND EGAKHPMDTD  360
QEKVGVDEKT MPVEPNSTSE KHLCETCFKS FRSYQALGGH RSSHIKFKVS IFNTMDRQQP  420
SVARQEAIRT RTGTNNIGAT TAGEQHRTPV NDHPCNICDK TFATGQALGG HKRCHSAADE  480
SVRAEQKVPL GFDLNEMPDD EDDQDSRSDH QSKDAAGDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0419399e-54KJ041939.1 Sesamum indicum clone TilSSR_13140 microsatellite Sesame_13140 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090475.20.0uncharacterized protein LOC105171147
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.17e-22C2H2 family protein