PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090487.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 186aa MW: 21751.8 Da PI: 8.3167

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.1	1.2e-42	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppG+rF Pt+eel+++yL++k+++++ +++++vi+ +d+y++eP +Lp + ++++ ++w+fF++r++++ +g +++r+t+sgyWkatg+ XP_011090487.1 4 MPPGYRFYPTEEELISFYLHHKLQDTNiVNINRVIPLLDVYRFEPCRLPwHcgeLCHGDPEQWFFFVPRQEREVRGGKPSRMTASGYWKATGSPS 98 79**********************96677788***********545643445677****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++g+++g+kk++vfykgrap+g+kt+W m+eyr+ XP_011090487.1 99 YVHSSDGRVIGVKKSMVFYKGRAPDGTKTKWKMNEYRA 136 **********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-46	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	44.911	4	162	IPR003441	NAC domain
Pfam	PF02365	7.4E-24	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEEMPPGYRF YPTEEELISF YLHHKLQDTN IVNINRVIPL LDVYRFEPCR LPWHCGELCH 60 GDPEQWFFFV PRQEREVRGG KPSRMTASGY WKATGSPSYV HSSDGRVIGV KKSMVFYKGR 120 APDGTKTKWK MNEYRAILRD DDMPTSIPKL RHEVSLCRVY VGSGSSRVFD RRPTEDVLVR 180 LPDHED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	4	167	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	4	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	4	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	4	167	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-33	4	167	20	173	NAC domain-containing protein 19
3swm_B	1e-33	4	167	20	173	NAC domain-containing protein 19
3swm_C	1e-33	4	167	20	173	NAC domain-containing protein 19
3swm_D	1e-33	4	167	20	173	NAC domain-containing protein 19
3swp_A	1e-33	4	167	20	173	NAC domain-containing protein 19
3swp_B	1e-33	4	167	20	173	NAC domain-containing protein 19
3swp_C	1e-33	4	167	20	173	NAC domain-containing protein 19
3swp_D	1e-33	4	167	20	173	NAC domain-containing protein 19
4dul_A	2e-33	4	167	17	170	NAC domain-containing protein 19
4dul_B	2e-33	4	167	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090487.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090487.1	1e-138	NAC domain-containing protein 90
Swissprot	Q9FMR3	6e-74	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2G9G839	4e-97	A0A2G9G839_9LAMI; Uncharacterized protein
STRING	Migut.N02478.1.p	7e-97	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	2e-76	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]