PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090495.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 164aa    MW: 18259.7 Da    PI: 7.1636
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.38.5e-46131121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la
  XP_011090495.1  13 PCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLQTQLA 107
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_011090495.1 108 LAQAE 112
                     99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.07812113IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-4513110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKDSSRKQGG AAPCAACKLL RRRCAHDCVF APYFPADEPH KFASVHKVFG ASNVNKMLQE  60
LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID MLQTQLALAQ AEVVHMRMRQ  120
FSSMTNSPEN ASPSSRDTQS HQAKSLFSMD MVEEQANMED SLWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-5091277125LOB family transfactor Ramosa2.1
5ly0_B2e-5091277125LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090495.11e-121LOB domain-containing protein 4-like
SwissprotQ9SHE92e-71LBD4_ARATH; LOB domain-containing protein 4
TrEMBLM1AGH31e-100M1AGH3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000222861e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.17e-74LOB domain-containing protein 4