PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011091059.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YB

Protein Properties

Length: 154aa MW: 17368.5 Da PI: 4.8937

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011091059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	171.1	1.2e-53	29	124	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvtseas+kc++e+rkt+ngdd++wa++tlGf+dy++pl yl++yre+eg+ XP_011091059.1 29 NEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFIGFVTSEASEKCRKERRKTVNGDDICWAMGTLGFDDYAAPLMRYLNRYREVEGD 123 69********************************************************************************************9 PP NF-YB 97 k 97 k XP_011091059.1 124 K 124 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.8E-51	25	138	IPR009072	Histone-fold
SuperFamily	SSF47113	2.33E-39	31	138	IPR009072	Histone-fold
Pfam	PF00808	2.8E-27	34	98	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.1E-16	62	80	No hit	No description
PRINTS	PR00615	9.1E-16	81	99	No hit	No description
PRINTS	PR00615	9.1E-16	100	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSDSNKSLNS PKPIFSLNMV DNSEAGPSNE QDRLLPIANV GRIMKQILPP NAKISKEAKE 60 TMQECVSEFI GFVTSEASEK CRKERRKTVN GDDICWAMGT LGFDDYAAPL MRYLNRYREV 120 EGDKVNQNRA SNSEEMEEIN CFSYTSNKPQ KESG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-43	30	119	3	92	Transcription factor HapC (Eurofung)
4g92_B	9e-43	30	119	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011091059.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091059.2	3e-98	nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	3e-55	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A068VIP2	9e-67	A0A068VIP2_COFCA; Uncharacterized protein
STRING	cassava4.1_018746m	2e-66	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-57	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]