PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091220.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 182aa    MW: 20552.2 Da    PI: 6.0844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143658123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  XP_011091220.1 36 YECTFCKRGFTNAQALGGHMNIH 58
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.1E-53462IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-73463No hitNo description
SMARTSM003550.00973658IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5523663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEPGKHSNSD TNSSDQNDHH QPEKSADDGT GVGRSYECTF CKRGFTNAQA LGGHMNIHRK  60
DKAKAKQKNI EEPSNFQSIK HNENFANLRY FPQTDHQQQR TGYYRDVRSG QVNYQVYLPS  120
SNPSFQTGNY FPFWRAEGFD ESRGDADLSL RIGAPEPVEG GNGEGNMKEN EVDLELRLGH  180
DP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091220.11e-136transcriptional regulator SUPERMAN
TrEMBLA0A2G9GA647e-60A0A2G9GA64_9LAMI; Uncharacterized protein
STRINGMigut.G00455.1.p8e-39(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein