PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011091297.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 363aa MW: 38211.2 Da PI: 10.3139

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011091297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.8	7.7e-38	77	176	3	100
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.kaaksaa 95 k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+pai+++tgt++ +a ++ +++ + + +ss++ + + + XP_011091297.1 77 MKRSSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIRWLLEQAEPAIIAATGTGTVPAIAMsVNGTLKIPTTTSSAAgGGSDDPT 171 6999***********************************************************88888444322222222222222221111111 PP TCP 96 kskks 100 ++k++ XP_011091297.1 172 NRKRK 176 22222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-32	81	174	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.497	82	136	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MASPHTQAFP ADHQETGLNL PPPTDNKGST PNYPRRTPTA AQPLRMAPPT TISLKLEEPD 60 ADLGEDKPPG ILPHPQMKRS STKDRHTKVE GRGRRIRMPA TCAARVFQLT RELGHKSDGE 120 TIRWLLEQAE PAIIAATGTG TVPAIAMSVN GTLKIPTTTS SAAGGGSDDP TNRKRKRPSS 180 SEFIDVNTTG YPASNATNNF AITNANNSAI ISCNNASVSA PLMSVIPIPA MWAIPTVASN 240 SNSSTPTFLI IPPNQAAQVL TVQPAAALNL APVVNISAAA RPISAFVAAM QPSGGGVNVA 300 QPVAQINLQT FQSLSAGVSA EKPNLPSSSN SSGATKTQML RDVSWEIHEK KEFPFVPTRS 360 AKN

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MASPHTQAFP ADHQETGLNL PPPTDNKGST PNYPRRTPTA AQPLRMAPPT TISLKLEEPD  60
ADLGEDKPPG ILPHPQMKRS STKDRHTKVE GRGRRIRMPA TCAARVFQLT RELGHKSDGE  120
TIRWLLEQAE PAIIAATGTG TVPAIAMSVN GTLKIPTTTS SAAGGGSDDP TNRKRKRPSS  180
SEFIDVNTTG YPASNATNNF AITNANNSAI ISCNNASVSA PLMSVIPIPA MWAIPTVASN  240
SNSSTPTFLI IPPNQAAQVL TVQPAAALNL APVVNISAAA RPISAFVAAM QPSGGGVNVA  300
QPVAQINLQT FQSLSAGVSA EKPNLPSSSN SSGATKTQML RDVSWEIHEK KEFPFVPTRS  360
AKN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00638	PBM	Transfer from Lj0g3v0004489	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011091297.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091297.1	0.0	transcription factor TCP9
Swissprot	O64647	7e-60	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2G9HFB0	1e-179	A0A2G9HFB0_9LAMI; Uncharacterized protein
STRING	Migut.B01672.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-59	TCP family protein