PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091364.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 242aa    MW: 28486.2 Da    PI: 9.5689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.7e-192168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd llv++vk++G g+W+ ++r  g++R +k+c++rw +yl
   XP_011091364.1 21 KGPWTAEEDRLLVEYVKLHGEGRWNNVSRLAGLKRNGKSCRLRWVNYL 68
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1674118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_011091364.1  74 RGQITPHEESIILELHARWGNR-WSTIARNLP-GRTDNEIKNYWRTH 118
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4971672IPR017930Myb domain
SuperFamilySSF466892.66E-3018115IPR009057Homeodomain-like
SMARTSM007171.0E-162070IPR001005SANT/Myb domain
PfamPF002494.7E-172168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-232275IPR009057Homeodomain-like
CDDcd001671.04E-112368No hitNo description
PROSITE profilePS5129418.6573123IPR017930Myb domain
SMARTSM007175.6E-1573121IPR001005SANT/Myb domain
PfamPF002497.6E-1474118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2476122IPR009057Homeodomain-like
CDDcd001674.49E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MYWEIMAENR GWGLMEEGWR KGPWTAEEDR LLVEYVKLHG EGRWNNVSRL AGLKRNGKSC  60
RLRWVNYLRP DLKRGQITPH EESIILELHA RWGNRWSTIA RNLPGRTDNE IKNYWRTHFK  120
KKGKPSSQNA EKSRARLLRR QQFQLQQQQQ HQTNTKTILP SFDENDNKLP TFTQLMRQEI  180
VLPSTSDEQG LLYSMINSCA AVPEQASNED MLMWDGLWNL DDLHGNITNR AYYQPALASN  240
FC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-262112227127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091364.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091364.10.0myb-related protein 305
TrEMBLA0A2G9HUJ91e-116A0A2G9HUJ9_9LAMI; Transcription factor, Myb superfamily
STRINGcassava4.1_013947m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-76myb domain protein 79