PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091774.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28117.2 Da    PI: 9.774
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr+g++KKA+ELSvLC+a+vaviifs+tgk++++ss
  XP_011091774.1  9 KKIENANSRQVTFSKRRAGLFKKAYELSVLCEADVAVIIFSNTGKVFDFSS 59
                    68***********************************************96 PP
2K-box62.91.2e-21781726100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     g ++e++ +++  +e++ Lk+eie+L+ +q ++lG+d + +sl++L+ LeqqL+++l  i+++K++ll++q+ +++ +e+++  en++Lrk++ee
  XP_011091774.1  78 GPAVEQKPEKQQPKEVDVLKEEIEKLKLKQLRFLGKDFTGMSLQDLRALEQQLNEGLLCIKERKEQLLMQQLAQSRVQEQRAVLENETLRKQVEE 172
                     45566777778889******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.833161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.06E-42272No hitNo description
SuperFamilySSF554555.23E-33276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-1683170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.26686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKIEIKK IENANSRQVT FSKRRAGLFK KAYELSVLCE ADVAVIIFSN TGKVFDFSSS  60
SMKKILTRYK KCLELTQGPA VEQKPEKQQP KEVDVLKEEI EKLKLKQLRF LGKDFTGMSL  120
QDLRALEQQL NEGLLCIKER KEQLLMQQLA QSRVQEQRAV LENETLRKQV EELRTLFPST  180
SYASPLCIEF HSTVKKSNPV SKAGSRSPET ACNGRLEDED SDTTLHLGPP SGISRKRKTP  240
DGETHSSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21169169MEF2C
5f28_B2e-21169169MEF2C
5f28_C2e-21169169MEF2C
5f28_D2e-21169169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238SRKRKT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091774.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091774.10.0agamous-like MADS-box protein AGL15
SwissprotQ392951e-69AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A067L5A51e-115A0A067L5A5_JATCU; Uncharacterized protein
STRINGMigut.N01802.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-62AGAMOUS-like 15