PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092208.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 258aa MW: 29576.2 Da PI: 7.067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	118	142	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H XP_011092208.1 118 FYCDLCNKQYKLAMEFEAHLSSydH 142 78*****************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	3.2E-18	21	66	IPR000467	G-patch domain
PROSITE profile	PS50174	16.853	23	68	IPR000467	G-patch domain
Pfam	PF01585	5.8E-16	24	64	IPR000467	G-patch domain
SuperFamily	SSF57667	1.63E-5	116	148	No hit	No description
Pfam	PF12171	1.3E-5	118	145	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	120	142	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MRVTENVDLD NVEQASLDTQ LPSSNIGFRL LQKMGWKGKG LGKDEQGIIE PIKSGIRDAK 60 LGLGKQEEDD YFTAEENIQR RKLDIEVEET EELAKKREVI AEREQKIQSE VKEIRKVFYC 120 DLCNKQYKLA MEFEAHLSSY DHNHRKRFKQ MRDMHGSSSR DDRQKREQQR QEREMAKFMQ 180 MADVHKQQLQ IQNQEETGTV PTPAATTSAT AVADQDQRKA LKFGFSAKGS MLRSSASTTA 240 KKPKVAIASV FSNDSEEE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092208.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092208.1	0.0	G patch domain-containing protein 8 isoform X2
TrEMBL	A0A2G9HNY5	1e-168	A0A2G9HNY5_9LAMI; Uncharacterized protein
STRING	Migut.N00974.1.p	1e-157	(Erythranthe guttata)