PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092212.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 416aa    MW: 46740.8 Da    PI: 7.3269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_011092212.1 14 KGLWSPEEDEKLIKHITRYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding43.86e-1467109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg ++ eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+
   XP_011092212.1  67 RGTFSLEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.856965IPR017930Myb domain
SuperFamilySSF466894.87E-2912108IPR009057Homeodomain-like
SMARTSM007175.0E-131363IPR001005SANT/Myb domain
PfamPF002492.6E-151461IPR001005SANT/Myb domain
CDDcd001679.38E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2465116IPR009057Homeodomain-like
SMARTSM007171.6E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.40666116IPR017930Myb domain
PfamPF002497.8E-1367109IPR001005SANT/Myb domain
CDDcd001672.94E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT RYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SLEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS EAAHNQEKTS PNTKNSNDKT SETYSSELSF FDGENSDNQA ILAAENPKPS  180
NSLRQSSNLA DAPPTSAHEL FLNRFLASHD QTSSTTSSRP SDFSGFLSFR QLHYGPNSGL  240
STNPNTNLVF STNDLKCLDI VPDHFSFNLP ARIKPDRNFP SDNPVSPFST KFQNWEACDN  300
GISTSNVNTF LENNGFQWGA ADCVKSEKSG GELTPEDIKI TEYLQSPFLQ GNTLQDYQTP  360
EDIYGETKSS QALFTAADQG PLMTNWHTNQ QQQSFQAAEI YSKHLQRIPA AFGQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092212.10.0transcription factor MYB86
TrEMBLA0A1S3YF181e-152A0A1S3YF18_TOBAC; transcription factor MYB86-like
STRINGXP_009628184.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-104myb domain protein 61