PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092503.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 227aa    MW: 25225.4 Da    PI: 8.3042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-101501901055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_011092503.1 150 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 190
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-14140206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-13145201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-10149194No hitNo description
PfamPF000105.2E-8150190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLRKGPARSL DCQDVSNDSM ESDEKLPEDV LQGKNFQPLK EDKTSSPPEI SKKRPGIPGG  60
FQRSKRSMKL KKCVKVDDEN DEDNNNNNTS LMLHRQSSSS CCSEDESNAS QELNGVASSS  120
SSQVSGALNL SGKTRASRGS ATDPQSLYAR KRRERINERL RILQNLVPNG TKVDISTMLE  180
EAVQYVKFLQ LQIKLLSSDD MWMYAPIAYN GMDIGLDLKI PTPKSQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0317892e-58KJ031789.1 Sesamum indicum clone TilSSR_2990 microsatellite sesame_2990 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552815.11e-156transcription factor bHLH84
RefseqXP_020552816.11e-156transcription factor bHLH84
RefseqXP_020552817.11e-156transcription factor bHLH84
SwissprotQ7XHI91e-63BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A2Z7D0M62e-88A0A2Z7D0M6_9LAMI; Basic helix-loop-helix family protein
STRINGPOPTR_0001s30150.17e-79(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.18e-45bHLH family protein