PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092504.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 208aa MW: 23151.1 Da PI: 8.4556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	9.8e-11	131	171	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_011092504.1 131 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 171 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.29E-15	121	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.224	121	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-13	126	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-11	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.97E-10	130	175	No hit	No description
Pfam	PF00010	4.5E-8	131	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MESDEKLPED VLQGKNFQPL KEDKTSSPPE ISKKRPGIPG GFQRSKRSMK LKKCVKVDDE 60 NDEDNNNNNT SLMLHRQSSS SCCSEDESNA SQELNGVASS SSSQVSGALN LSGKTRASRG 120 SATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML EEAVQYVKFL QLQIKLLSSD 180 DMWMYAPIAY NGMDIGLDLK IPTPKSQP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092504.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ031789	2e-58	KJ031789.1 Sesamum indicum clone TilSSR_2990 microsatellite sesame_2990 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552815.1	1e-151	transcription factor bHLH84
Refseq	XP_020552816.1	1e-151	transcription factor bHLH84
Refseq	XP_020552817.1	1e-151	transcription factor bHLH84
Swissprot	Q7XHI9	6e-64	BH084_ARATH; Transcription factor bHLH84
TrEMBL	A0A2Z7D0M6	1e-85	A0A2Z7D0M6_9LAMI; Basic helix-loop-helix family protein
STRING	POPTR_0001s30150.1	3e-79	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	3e-45	bHLH family protein