PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092580.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Protein Properties

Length: 459aa MW: 51336.9 Da PI: 6.6334

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53	6.2e-17	98	185	1	94
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lpkkf++ h + ++ +++l de+ +++ vk+ + k++ l++GW++F +++L egD+vvF+l++ +f+l+ XP_011092580.1 98 FLKLMLRSHVSGGFWLGLPKKFCDGHlpK----GDEMMVLVDENEEEYHVKYLVHKTG----LSGGWRGFSIEHKLLEGDVVVFQLIKPCKFKLY 184 899******************999432....4569***********555555....***********************99888655 PP E CS B3 94 v 94 + XP_011092580.1 185 I 185 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-19	91	188	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.08E-22	93	191	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.84E-25	96	187	No hit	No description
PROSITE profile	PS50863	12.393	98	189	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.1E-15	98	185	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-23	98	189	IPR003340	B3 DNA binding domain
Pfam	PF05266	3.3E-7	336	445	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MAIARISSSN RSPVSSSKSK LKQKLAWEFK RKLVKQRLMS LDNNYKDGES VINARPITCH 60 PPKVETTSDH HSRDSVTTSA MERAKEVQAN LSPHFPSFLK LMLRSHVSGG FWLGLPKKFC 120 DGHLPKGDEM MVLVDENEEE YHVKYLVHKT GLSGGWRGFS IEHKLLEGDV VVFQLIKPCK 180 FKLYIVRARR LSEVDGAITL LNLDFQTGPI NAVKMEEKLE ENAGISETAA EKYMEPLAVD 240 NSQKNDGGSI PMNQPAPDQS GDGGESFGPE IMDGIKFAES LLSFKDVGCF EDFNIHVDGL 300 VLDSELPMHL RTKYYELCRS QSSFLHEKVI PGLNSKLAAG MILETINIAD AIRVANPNMG 360 SNHFESWDKT LKAFDDLGMT VGFLRARIHK LVSLSCESQT VIELKRTERA AAEDEMRSLN 420 EKLSNIRLLI EKLDSEIAAL KVKNEELGFL FKEVAGAPW

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MAIARISSSN RSPVSSSKSK LKQKLAWEFK RKLVKQRLMS LDNNYKDGES VINARPITCH  60
PPKVETTSDH HSRDSVTTSA MERAKEVQAN LSPHFPSFLK LMLRSHVSGG FWLGLPKKFC  120
DGHLPKGDEM MVLVDENEEE YHVKYLVHKT GLSGGWRGFS IEHKLLEGDV VVFQLIKPCK  180
FKLYIVRARR LSEVDGAITL LNLDFQTGPI NAVKMEEKLE ENAGISETAA EKYMEPLAVD  240
NSQKNDGGSI PMNQPAPDQS GDGGESFGPE IMDGIKFAES LLSFKDVGCF EDFNIHVDGL  300
VLDSELPMHL RTKYYELCRS QSSFLHEKVI PGLNSKLAAG MILETINIAD AIRVANPNMG  360
SNHFESWDKT LKAFDDLGMT VGFLRARIHK LVSLSCESQT VIELKRTERA AAEDEMRSLN  420
EKLSNIRLLI EKLDSEIAAL KVKNEELGFL FKEVAGAPW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092580.1	0.0	B3 domain-containing protein Os01g0234100 isoform X1
TrEMBL	A0A022RQ98	1e-159	A0A022RQ98_ERYGU; Uncharacterized protein
STRING	Migut.N01194.1.p	1e-160	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-43	B3 family protein