PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092583.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Protein Properties

Length: 379aa MW: 42372.6 Da PI: 5.2244

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.5	4.5e-17	18	105	1	94
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lpkkf++ h + ++ +++l de+ +++ vk+ + k++ l++GW++F +++L egD+vvF+l++ +f+l+ XP_011092583.1 18 FLKLMLRSHVSGGFWLGLPKKFCDGHlpK----GDEMMVLVDENEEEYHVKYLVHKTG----LSGGWRGFSIEHKLLEGDVVVFQLIKPCKFKLY 104 899******************999432....4569***********555555....***********************99888655 PP E CS B3 94 v 94 + XP_011092583.1 105 I 105 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-19	11	108	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-23	13	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.61E-25	16	107	No hit	No description
PROSITE profile	PS50863	12.393	18	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-15	18	105	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-23	18	109	IPR003340	B3 DNA binding domain
Pfam	PF05266	2.3E-7	256	365	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MERAKEVQAN LSPHFPSFLK LMLRSHVSGG FWLGLPKKFC DGHLPKGDEM MVLVDENEEE 60 YHVKYLVHKT GLSGGWRGFS IEHKLLEGDV VVFQLIKPCK FKLYIVRARR LSEVDGAITL 120 LNLDFQTGPI NAVKMEEKLE ENAGISETAA EKYMEPLAVD NSQKNDGGSI PMNQPAPDQS 180 GDGGESFGPE IMDGIKFAES LLSFKDVGCF EDFNIHVDGL VLDSELPMHL RTKYYELCRS 240 QSSFLHEKVI PGLNSKLAAG MILETINIAD AIRVANPNMG SNHFESWDKT LKAFDDLGMT 300 VGFLRARIHK LVSLSCESQT VIELKRTERA AAEDEMRSLN EKLSNIRLLI EKLDSEIAAL 360 KVKNEELGFL FKEVAGAPW

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MERAKEVQAN LSPHFPSFLK LMLRSHVSGG FWLGLPKKFC DGHLPKGDEM MVLVDENEEE  60
YHVKYLVHKT GLSGGWRGFS IEHKLLEGDV VVFQLIKPCK FKLYIVRARR LSEVDGAITL  120
LNLDFQTGPI NAVKMEEKLE ENAGISETAA EKYMEPLAVD NSQKNDGGSI PMNQPAPDQS  180
GDGGESFGPE IMDGIKFAES LLSFKDVGCF EDFNIHVDGL VLDSELPMHL RTKYYELCRS  240
QSSFLHEKVI PGLNSKLAAG MILETINIAD AIRVANPNMG SNHFESWDKT LKAFDDLGMT  300
VGFLRARIHK LVSLSCESQT VIELKRTERA AAEDEMRSLN EKLSNIRLLI EKLDSEIAAL  360
KVKNEELGFL FKEVAGAPW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092583.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092580.1	0.0	B3 domain-containing protein Os01g0234100 isoform X1
TrEMBL	A0A1S4AGZ8	1e-144	A0A1S4AGZ8_TOBAC; B3 domain-containing protein Os01g0234100-like
STRING	Migut.H01031.1.p	1e-146	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-42	B3 family protein