PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092666.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YB

Protein Properties

Length: 141aa MW: 15879.8 Da PI: 5.7423

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	153.3	4.4e-48	3	98	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 e+d++lPianv+rimk++lP akisk+aket+qec+sefi fvt+easd+c++e+rkt+ngdd++wal++lGf++y e++ yl+k re+e+++ XP_011092666.1 3 DEHDKLLPIANVGRIMKQILPPSAKISKEAKETMQECASEFICFVTGEASDRCHKENRKTVNGDDICWALSSLGFDHYSEAMLRYLQKLREFERQR 98 589******************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.7E-48	2	117	IPR009072	Histone-fold
SuperFamily	SSF47113	9.47E-38	6	118	IPR009072	Histone-fold
Pfam	PF00808	5.1E-26	9	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.2E-16	36	54	No hit	No description
PRINTS	PR00615	3.2E-16	55	73	No hit	No description
PRINTS	PR00615	3.2E-16	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MTDEHDKLLP IANVGRIMKQ ILPPSAKISK EAKETMQECA SEFICFVTGE ASDRCHKENR 60 KTVNGDDICW ALSSLGFDHY SEAMLRYLQK LREFERQRAN QSNYKPSSST EEKDEATSSA 120 ASAPSFDFEI LERGGRSSPK P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	7e-38	4	93	3	92	Transcription factor HapC (Eurofung)
4g92_B	7e-38	4	93	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00133	DAP	Transfer from AT1G09030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092666.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092666.1	1e-102	nuclear transcription factor Y subunit B-4
Swissprot	O04027	4e-52	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A2G9IB77	1e-72	A0A2G9IB77_9LAMI; CCAAT-binding factor, subunit A (HAP3)
STRING	Migut.N01993.1.p	7e-75	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	2e-54	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]