PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092697.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 187aa MW: 21680.3 Da PI: 4.6201

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.8	6.3e-38	8	126	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++k+ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t+sgyW++ g +++++s+ XP_011092697.1 8 LPPGFRFFPTDEELVVHFLHRKALLLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGRKWYFYSRRTQ--------SRVTESGYWQSIGVEEPIFSS 93 79***********************999.99**********977778899**9854........79*************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ +g+kk +fy g+ ++g+kt+W+m+eyrl XP_011092697.1 94 SGQRIGMKKYCAFYIGEPSEGVKTNWIMQEYRL 126 *****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-48	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	44.875	8	156	IPR003441	NAC domain
Pfam	PF02365	2.1E-22	9	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGDSSFNLPP GFRFFPTDEE LVVHFLHRKA LLLPCHPDVI PDLDLYPYDP WDLDGKAMAE 60 GRKWYFYSRR TQSRVTESGY WQSIGVEEPI FSSSGQRIGM KKYCAFYIGE PSEGVKTNWI 120 MQEYRLMDSS STSRSSKRRN SKIDYSKWVV CLVYEKGDND HDEGTELSCL DEVFLSMDDL 180 DEISLPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-42	4	156	13	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-42	4	156	13	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-42	4	156	13	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-42	4	156	13	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	4	156	16	168	NAC domain-containing protein 19
3swm_B	2e-42	4	156	16	168	NAC domain-containing protein 19
3swm_C	2e-42	4	156	16	168	NAC domain-containing protein 19
3swm_D	2e-42	4	156	16	168	NAC domain-containing protein 19
3swp_A	2e-42	4	156	16	168	NAC domain-containing protein 19
3swp_B	2e-42	4	156	16	168	NAC domain-containing protein 19
3swp_C	2e-42	4	156	16	168	NAC domain-containing protein 19
3swp_D	2e-42	4	156	16	168	NAC domain-containing protein 19
4dul_A	1e-42	4	156	13	165	NAC domain-containing protein 19
4dul_B	1e-42	4	156	13	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092697.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092697.1	1e-138	NAC domain-containing protein 104 isoform X1
Refseq	XP_020553092.1	1e-138	NAC domain-containing protein 104 isoform X1
Refseq	XP_020553093.1	1e-138	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	3e-82	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2G9GLR7	2e-98	A0A2G9GLR7_9LAMI; Uncharacterized protein
STRING	XP_009762857.1	1e-96	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	6e-72	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]