PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092708.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 301aa    MW: 32180 Da    PI: 6.2753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017153175123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  XP_011092708.1 153 YKCSVCDKVFPSYQALGGHKASH 175
                     9***********99999998887 PP
2zf-C2H213.20.00027205227123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k+F++   L  H r+H
  XP_011092708.1 205 HACTICHKTFPTGQALGGHKRKH 227
                     67*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-9152227No hitNo description
SMARTSM003550.003153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.385153180IPR007087Zinc finger, C2H2
PfamPF139129.2E-14153177IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SMARTSM003550.056205227IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-12205229IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099205227IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNVMRTLPVV LPPTQPSLRY CCFDDVDQFW SVDSWPEAEQ CKIMDDCLSE EEEIVAECLL  60
MLAQSGGGFC VSSSSLEALT PPAPAQTLPS FRRHDVGPES WMRAKRSKRV SDEAYIAGCL  120
VILARSDDHP TSPATDDSEK QTEVVSPSPV NCYKCSVCDK VFPSYQALGG HKASHRSKPP  180
TASDTATIET SKYTAGTSYS SGRPHACTIC HKTFPTGQAL GGHKRKHYEG VIGRSAGAKS  240
GINSTDGGSS LSGVTSSDGG ATSITHGDGD GHHATPIRRN LDLNLPPPPE LDSWFIGAKL  300
P
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092508.11e-127zinc finger protein AZF2-like
TrEMBLA0A2G9HQF79e-61A0A2G9HQF7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-34zinc-finger protein 2