PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092710.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 217aa MW: 23776.9 Da PI: 8.5126

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.2	8e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_011092710.1 2 SCNGCRVLRKGCNDNCILRQSLqgidtPQAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQS 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_011092710.1 97 AVETVLR 103 *998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.032	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSCNGCRVLR KGCNDNCILR QSLQGIDTPQ AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQSAVET VLRGGVLGPL PEFSVSDESL 120 ESNNNDLYGS RDLNMRLKRK VFDIENQTTS GLDLRLTASF PARMTAGGRV NRVRNKRRPA 180 SPSDESDTTT LESGIVCHQG SHQNHGHHEA KLLQLFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092710.1	1e-161	LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1S4AL07	1e-105	A0A1S4AL07_TOBAC; LOB domain-containing protein 37-like
STRING	XP_009625187.1	1e-106	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-68	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]