PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092834.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SRS

Protein Properties

Length: 214aa MW: 23834.5 Da PI: 8.286

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	166.1	1.9e-51	15	157	4	155
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 + +CqdCGnqak++C+h RCRtCCk+rgf+C+thvkstWvp+ +r+ ++ ++ ++ +++ ++++ + s+ ++ + ++a + XP_011092834.1 15 SSRRCQDCGNQAKRECQHLRCRTCCKNRGFECQTHVKSTWVPVCRRQPTHHIMHHH--HQ----ISSTLHQHQ---LLHGSNPKRHRQNQA-AFL 99 5679**************************************998753332222..11....111222222...223333333332233.223 PP DUF702 99 ele.tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 ++ +lP e+s +avfrcvrvss d+ +++aYqt+vsigGhvf GiLydqG+e++ XP_011092834.1 100 GFQiEGTLPGEMSFPAVFRCVRVSSADNMVDQYAYQTSVSIGGHVFTGILYDQGPEDQ 157 3330335**********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-53	16	155	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.7E-24	19	60	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.3E-23	107	154	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MMRGGEILNS SSSSSSRRCQ DCGNQAKREC QHLRCRTCCK NRGFECQTHV KSTWVPVCRR 60 QPTHHIMHHH HQISSTLHQH QLLHGSNPKR HRQNQAAFLG FQIEGTLPGE MSFPAVFRCV 120 RVSSADNMVD QYAYQTSVSI GGHVFTGILY DQGPEDQLEE SGNYVTGESS SDGLLQQHPN 180 FVNRATTGTV SSSYPTSFCA VTAATSQFSQ YPKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092834.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092834.1	1e-160	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9XGX0	4e-45	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A4D8ZI00	2e-82	A0A4D8ZI00_SALSN; Uncharacterized protein
TrEMBL	A0A4D9C4F9	2e-82	A0A4D9C4F9_SALSN; Uncharacterized protein
STRING	Solyc01g110140.2.1	4e-66	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-46	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]