PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092848.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family DBB
Protein Properties Length: 177aa    MW: 19805.4 Da    PI: 6.6404
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.27.2e-08433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC+ C ++ H
  XP_011092848.1  4 LCDVCESAAATLFCAADEAALCRACDDKVH 33
                    7**************************998 PP
2zf-B_box27.94.8e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  XP_011092848.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHR 92
                    789***************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003367.0E-8147IPR000315B-box-type zinc finger
CDDcd000211.39E-6334No hitNo description
PfamPF006431.5E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501199.2295196IPR000315B-box-type zinc finger
SMARTSM003361.0E-115196IPR000315B-box-type zinc finger
PfamPF006438.8E-75292IPR000315B-box-type zinc finger
CDDcd000212.67E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MRTLCDVCES AAATLFCAAD EAALCRACDD KVHTCNKLAS RHIRVGLAEL SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HRRYLLLRQR VEFPGNDKPG SREELGSQKG  120
RLREKENLQN HRFSPNSFIG NSSESDEKME DFLIDLNARP PGLYDRAANN QVLQRGA
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092848.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092847.11e-125B-box zinc finger protein 19 isoform X3
SwissprotC0SVM52e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2G9G0M33e-85A0A2G9G0M3_9LAMI; Uncharacterized protein
STRINGMigut.B00176.1.p2e-84(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.19e-74DBB family protein