PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093009.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26469.8 Da    PI: 4.7078
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.2e-202478256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++++f++eq++ Le +Fe+++++  +++++LA++lgL+ rqV +WFqN+Ra++k
  XP_011093009.1 24 KNKRRFSDEQIRSLEVMFESESKLEPKKKAQLANELGLQPRQVAIWFQNKRARWK 78
                    56779*************************************************9 PP
2HD-ZIP_I/II116.41.6e-3725116293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krr+s+eq+++LE +Fe+e+kLep++K++la+eLglqprqva+WFqn+RAR+k+k++Ek+y+ L ++y++l+++ e+L++++++L  +l++
  XP_011093009.1  25 NKRRFSDEQIRSLEVMFESESKLEPKKKAQLANELGLQPRQVAIWFQNKRARWKSKHMEKEYAILLANYNNLASQVEALKEQNQSLLIKLQK 116
                     79************************************************************************************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.72E-19680IPR009057Homeodomain-like
PROSITE profilePS5007117.8962080IPR001356Homeobox domain
SMARTSM003897.7E-182284IPR001356Homeobox domain
PfamPF000461.0E-172478IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-192586IPR009057Homeodomain-like
CDDcd000861.96E-152781No hitNo description
PRINTSPR000314.7E-65160IPR000047Helix-turn-helix motif
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PRINTSPR000314.7E-66076IPR000047Helix-turn-helix motif
PfamPF021832.0E-1180121IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMSDWMENSC VGNLNTMAKK KKIKNKRRFS DEQIRSLEVM FESESKLEPK KKAQLANELG  60
LQPRQVAIWF QNKRARWKSK HMEKEYAILL ANYNNLASQV EALKEQNQSL LIKLQKLKNE  120
MMGKSEGQIQ EIARKGITDD DGESDHTKIQ LSEVTNVGTR SLEEILSDDD SSIRPVLFGL  180
DEENELLKLV EPAAADSSLT SAEDWGSLDS DDLINQPTDH DCYQWWDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093009.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093009.11e-168homeobox-leucine zipper protein ATHB-12
SwissprotP468975e-52ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2G9H7438e-93A0A2G9H743_9LAMI; Transcription factor HEX
STRINGXP_010559143.15e-73(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.19e-50homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]