PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093025.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 605aa    MW: 66868.8 Da    PI: 7.882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-12440486455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ Y+ +Lq
  XP_011093025.1 440 NHVEAERQRREKLNQRFYALRAVVPTiS------KMDKASLLGDAIAYVTELQ 486
                     799***********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5452240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.425436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-13439490No hitNo description
SuperFamilySSF474595.5E-18439504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9440486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17440499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MKTGFGMGSV GWNNEDKAMA AAVLGTKAFD YLMSSSVLAE CSLMAMGNDE NLQNKLSDLV  60
ELPNSANFCW NYAIFWQLSR SKTGELVLGW GDGCCREPHE DEDSDVTQIL KIRLEDDAHQ  120
RMRKRVLQKL HILFGGTEED SYAFGLDKVT DVEMFFLASM YFSFPRGEGG PGRCFGSGKH  180
VWLSDALKSS IHYCVRSFLA KSAGMQTIVL IPTDVGVVEL GSVRCIPESL ELVEVVRSSF  240
SSLSPLFKAK KAAAVAAVTD KKDGDSPISS LVIGNHAEVV PKIFGQDLYS GRMQLKEKFA  300
PGKADDRTLD AGANAKRVPV TTTTRNGFHN TAWMQYSSMK PGNQVEIYTT QTSAKNVHGL  360
GNGAREEYRG NNLQHQKPPQ MQIDFTGATS RPVISRPRSA ESEHSDVEVS CKEVCTGPPE  420
DKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPTISKMD KASLLGDAIA  480
YVTELQKKLK DMECERERQS REPLASEAKP NTETQVCSPT VDIQTGRNEL TLRVSCPLET  540
HPASRVIRAI KDAQATIIEA KFVTGSEKVF HTFVVKSQGS EHLTKDKLIE ALSHESSLSQ  600
QSSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27434496264Transcription factor MYC2
5gnj_B1e-27434496264Transcription factor MYC2
5gnj_E1e-27434496264Transcription factor MYC2
5gnj_F1e-27434496264Transcription factor MYC2
5gnj_G1e-27434496264Transcription factor MYC2
5gnj_I1e-27434496264Transcription factor MYC2
5gnj_M1e-27434496264Transcription factor MYC2
5gnj_N1e-27434496264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421429KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093025.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093025.10.0transcription factor bHLH13-like isoform X1
RefseqXP_011093026.10.0transcription factor bHLH13-like isoform X1
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2Z4K5120.0A0A2Z4K512_TECGR; BHLH1 protein
STRINGXP_009770264.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]