PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093093.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 771aa    MW: 84569.5 Da    PI: 7.279
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.3e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
   XP_011093093.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-171874IPR009057Homeodomain-like
PROSITE profilePS5129420.1731973IPR017930Myb domain
TIGRFAMsTIGR015577.1E-172271IPR006447Myb domain, plants
SMARTSM007171.1E-122371IPR001005SANT/Myb domain
PfamPF002493.2E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-82464IPR009057Homeodomain-like
CDDcd001671.50E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MDPYSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLEKEALVKG VPIGHTLDIE IPPPRPKRKP SNPYPRKTSV GVRTSQVGLK  120
DGKLSNPVSS TCLSNMKVEL EKETEKPFDD GKLENSNEYQ EKDNCTEALT LLKEACCASP  180
SSANKTSLSV CDAPKRSCTF RQYVQLSKEA RNQDETTASQ VTIEAEGLRT HKSDSKELLQ  240
DGAPSNISDD VDPYLLHEKS LNNRRIDELK KQKAVDTLPT SDVQATQSYP RHVPVHILDG  300
SLGMSGQSIS PDMSYAESMF HQMGGVHSHQ NLFMNPATSA TPEHFSNASR SSIHQSVPSY  360
HPIFTPIQNQ DDYRSFLHMS STFSSLIVSA LSQNPAAYAA ASFASTLWPC ANMEAPVEPS  420
TAQTGTFQSR PISSAPSMAA IAAATVAAAT AWWAAHGLLP LCAPFHPGFT CSPASASATP  480
MASSQGKAVN SERRENSPDP ALRGQQLEPE CSEALHEQHS RAKSPTLSTS DSEATEGAKL  540
NLGLAADETE KIADAAELHD AKSKNKKQVD RSSCGSNTPS SSEVEADALE KHTKGKEEKL  600
MKDKEDSQGL GVVHPVGDPF SRRFRSTSNM NDSIHMQGRL AFQALFSREV LPQSFSPPHG  660
VKIKGKKISI KDKENPEEKV ENGLQLDLNG KTWATFSEKQ GVQENALLTG ENKEDGLLNL  720
GLGHAKLKAH RTGFKPYKRC SVEAKESRVS ANSQDDEKGP KRLRLEGETS T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553443.10.0protein LHY-like
TrEMBLA0A2G9H7530.0A0A2G9H753_9LAMI; Uncharacterized protein
STRINGMigut.N01518.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97101315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.17e-86circadian clock associated 1