PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093167.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HD-ZIP

Protein Properties

Length: 834aa MW: 91060.3 Da PI: 6.1877

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.7e-21	138	193	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k XP_011093167.1 138 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 193 688999***********************************************999 PP
2	START	204.3	5e-64	343	569	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela++a++elvk+a+ +e++W +s e++n +e++++f++ + +ea+r++g+v+ ++ lve+l+d++ +W e+++ + XP_011093167.1 343 ELALAAMDELVKMAQTDEALWLRSFeggrEILNHEEYVRTFST--PcigmkpngFVTEASRETGMVIINSLALVETLMDSN-KWAEMFPciiaRT 434 5899*******************9***********66..3459999999**********************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtw 166 +t++vis+g galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + s+ + +++lpSg+++++++ng+skvtw XP_011093167.1 435 ATTDVISNGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGgSPTYPNCRRLPSGCVVQDMPNGYSKVTW 529 ***********************************************************999************************* PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh++++++++h l+rsl++ g+ +ga++wvatlqrqce+ XP_011093167.1 530 VEHAEYDESVVHHLYRSLISAGMGFGAQRWVATLQRQCEC 569 ************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-20	121	195	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.6E-22	124	195	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	135	195	IPR001356	Homeobox domain
SMART	SM00389	9.9E-18	136	199	IPR001356	Homeobox domain
CDD	cd00086	1.36E-18	137	195	No hit	No description
Pfam	PF00046	1.4E-18	138	193	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	170	193	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.716	334	572	IPR002913	START domain
SuperFamily	SSF55961	1.65E-33	336	569	No hit	No description
CDD	cd08875	2.57E-124	338	568	No hit	No description
Pfam	PF01852	2.1E-55	343	569	IPR002913	START domain
SMART	SM00234	1.0E-49	343	569	IPR002913	START domain
SuperFamily	SSF55961	3.3E-23	597	827	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 834 aa Download sequence Send to blast
MNFGDFLDHN NSCGGGGARI VADLPYSNSS SNNNTIGTNP SGNINSNNDM PTGAIAQPRL 60 VPQPLSTKPM FNSPGLSLAL QTSMEGQGEM ARMGENYETS NVGGRRSRDE EHESRSGSDN 120 MEGASGDDQD ASDKPPRKKR YHRHTPQQIQ ELEALFKECP HPDEKQRLEL SKRLCLETRQ 180 VKFWFQNRRT QMKTQLERHE NSILRQENDK LRAENMSMRE AMRNPICTNC GGPAMIGEIS 240 LEEQHLRIEN ARLKDELDRV CALAGKFLGR PVSSLAAPPM PNSSLELGVG SNGFGGGLNT 300 VIPTTLPLGP TDYGSSLPVM PPTKATMNIA PIERSLERSM YLELALAAMD ELVKMAQTDE 360 ALWLRSFEGG REILNHEEYV RTFSTPCIGM KPNGFVTEAS RETGMVIINS LALVETLMDS 420 NKWAEMFPCI IARTATTDVI SNGMGGTRNG ALQLMHAELQ VLSPLVPVRE VNFLRFCKQH 480 AEGVWAVVDV SIDTIRETSG GSPTYPNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDESVV 540 HHLYRSLISA GMGFGAQRWV ATLQRQCECL AILMSSNVPT RDHTAITAGG RRSMLKLAQR 600 MTNNFFAGVC ASTVHKWNKL RTENVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVTP 660 QRLFDFLRNE HLRSEWDILS NGGPMQEMAH IAKGQDHGNC VSLLRASAMN ANQSSMLILQ 720 ETCIDAAGSL VVYAPVDIPA MHVVMNGGDS AYVALLPSGF AIVPDGPGSR GGDDGPTSNG 780 GPGHRVSGSL LTVAFQILVN SLPTAKLTVE SVETVNNLIS CTVQKIKAAL QCES

Sequence ? help Back to Top

Protein Sequence Length: 834 aa Download sequence Send to blast

MNFGDFLDHN NSCGGGGARI VADLPYSNSS SNNNTIGTNP SGNINSNNDM PTGAIAQPRL  60
VPQPLSTKPM FNSPGLSLAL QTSMEGQGEM ARMGENYETS NVGGRRSRDE EHESRSGSDN  120
MEGASGDDQD ASDKPPRKKR YHRHTPQQIQ ELEALFKECP HPDEKQRLEL SKRLCLETRQ  180
VKFWFQNRRT QMKTQLERHE NSILRQENDK LRAENMSMRE AMRNPICTNC GGPAMIGEIS  240
LEEQHLRIEN ARLKDELDRV CALAGKFLGR PVSSLAAPPM PNSSLELGVG SNGFGGGLNT  300
VIPTTLPLGP TDYGSSLPVM PPTKATMNIA PIERSLERSM YLELALAAMD ELVKMAQTDE  360
ALWLRSFEGG REILNHEEYV RTFSTPCIGM KPNGFVTEAS RETGMVIINS LALVETLMDS  420
NKWAEMFPCI IARTATTDVI SNGMGGTRNG ALQLMHAELQ VLSPLVPVRE VNFLRFCKQH  480
AEGVWAVVDV SIDTIRETSG GSPTYPNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDESVV  540
HHLYRSLISA GMGFGAQRWV ATLQRQCECL AILMSSNVPT RDHTAITAGG RRSMLKLAQR  600
MTNNFFAGVC ASTVHKWNKL RTENVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVTP  660
QRLFDFLRNE HLRSEWDILS NGGPMQEMAH IAKGQDHGNC VSLLRASAMN ANQSSMLILQ  720
ETCIDAAGSL VVYAPVDIPA MHVVMNGGDS AYVALLPSGF AIVPDGPGSR GGDDGPTSNG  780
GPGHRVSGSL LTVAFQILVN SLPTAKLTVE SVETVNNLIS CTVQKIKAAL QCES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093167.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093167.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2G9HWV6	0.0	A0A2G9HWV6_9LAMI; Transcription factor DLX
STRING	Solyc01g091630.2.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]