PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093305.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 675aa    MW: 75642.3 Da    PI: 4.6606
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-10526567346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rW++++ el+++av+q+G++  + I + ++  Rt+ q+k+++ k
   XP_011093305.1 526 RWSKQDTELFYEAVRQFGTD-LSMIQQLFP-DRTRRQVKLKYKK 567
                      8*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.5E-27519600No hitNo description
PROSITE profilePS512939.091522570IPR017884SANT domain
SMARTSM007172.7E-7523571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-5526567IPR009057Homeodomain-like
CDDcd001676.06E-7526567No hitNo description
SuperFamilySSF466893.66E-10526573IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MGIDLDPLDD IFADEAVKNA RAVGKFQPKS KFRPPRKDAA ATSLSSSQAA QTIDPAQSES  60
SDPRRRAESS EKGLDVVSNY DGGWHASIEK SVTENADIFI GLEALGDFLP HTTTDMGGGP  120
APVISSVGDS THRCKVADVP KCHELSAAVD PVTAGKPIVS SSDGCGRMHD KELGREEMDI  180
MDSINASEFT TNSGHRTGKF QPKPKLQMHE VKPAESLSCS LGSQSVPPEI SYAEKDFSPT  240
FQQDDVLDLS SLGFTHTLPT EASSELPLNE ESMNLTEMTQ LDSGIPLECP PEIPAKLASR  300
RAKIGRNKTQ TALDPSQQQQ KTSTSCQENE MGRSLRPRKS KTNFCELGDE VEDVVRASEE  360
FSEECPVNSA AEEETVNNEE FQVESDSQMK KVKQKFEKPV RKRKETEASD KDAKPKKFSH  420
STRRRRVDKV LLATPEDEIE YQKVPLRDLI LLAEHKEREM KKEEAGAGVT ANKQSNGNSS  480
SRYNQEETFT SEQNGEYNDG QGSPRIEESP IYFNYHTHMD RTPSIRWSKQ DTELFYEAVR  540
QFGTDLSMIQ QLFPDRTRRQ VKLKYKKEER QHPLRLREAL TNRTKDHSHF EKVIERLKQI  600
AAEENQNADN DESIDLTGNE VDEGTLNAGD EEAKDEHIDE EVNENVENDF TEVQSPSKSE  660
DIEDDLFIWS QYKSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397403KPVRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093305.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553619.10.0transcription factor TFIIIB component B''-like isoform X2
TrEMBLA0A2G9GU170.0A0A2G9GU17_9LAMI; Uncharacterized protein
STRINGMigut.F00900.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-46MYB_related family protein