PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093328.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 252aa    MW: 27591.2 Da    PI: 5.8095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1985135256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++ge
  XP_011093328.1  85 TYRGVRRRS-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGE 135
                     59****887.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-3685148IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2285143IPR016177DNA-binding domain
PROSITE profilePS5103223.86885142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3285143IPR001471AP2/ERF domain
PfamPF008472.3E-1486135IPR001471AP2/ERF domain
CDDcd000185.25E-3186144No hitNo description
PRINTSPR003671.2E-108697IPR001471AP2/ERF domain
PRINTSPR003671.2E-10108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDQEIILETL TQHHHSLSPT TTSSGGSSWT PPASTATSSS TSSPSAADRK QATTSLKEWS  60
KAQKSTKRAQ AEEDDKGAAA EKQTTYRGVR RRSWGKWVCE IREPRKKSRI WLGTYPTAEM  120
AARAHDVAAL AIKGESAYLN FPHLAHQLPR PASTTPKDIQ AASAKAAAYT FISAEAEPSS  180
HSSTNLELEN IEESSTSASM AHDDDTFFDL PDLSLDSTDH SSPYCYNFAS SWQLAGADVG  240
FRLEDPFPWE CY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1972143273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093328.10.0ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ71e-58ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2G9GT812e-99A0A2G9GT81_9LAMI; Uncharacterized protein
STRINGXP_009771308.12e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]