PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093536.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 421aa MW: 46072.7 Da PI: 6.9368

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093536.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	350	395	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + ae+Le+AveYIk+Lq XP_011093536.1 350 SIAERMRRTRISEKMKKLQDLFPNM----DKQTNTAEMLELAVEYIKNLQ 395 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.316	344	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-15	347	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.09E-13	348	399	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.7E-15	349	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-12	350	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	350	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MFSSEVISPD MRRSGGFLHS DPRNQSNFKY VSAVGEFSKS REFMGSEFYQ NQNQHHQNQG 60 GLARYRSAPS SFLAALLDST TDNSSSGDEC EAFFSALMDG PGDPNQKNNE NQMQFSMKQE 120 VGSDLEAEPR CGENGQVTGY GSAVNGGGGA VVGSYSVGNG NKSNCANLVR QSSSPAGFFN 180 GFGVMGEVGN YRVHNHAEAG SSAGGLSNHM NYSSCPSSSS MFMPSIPETD NESFGRSTTE 240 NGRLRNGNSA SCGEYEPEPS LHHDSWNQAP FNNSLKRDRD GHPKMYSDFS GLEDPNGETR 300 KKPLGLVHHM SLPRTTSEMA AGENYLQFGQ DTTARCQVRA KRGCATHPRS IAERMRRTRI 360 SEKMKKLQDL FPNMDKQTNT AEMLELAVEY IKNLQKQVQT LTDTRAKCVC SSKLQLTSPT 420 T

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MFSSEVISPD MRRSGGFLHS DPRNQSNFKY VSAVGEFSKS REFMGSEFYQ NQNQHHQNQG  60
GLARYRSAPS SFLAALLDST TDNSSSGDEC EAFFSALMDG PGDPNQKNNE NQMQFSMKQE  120
VGSDLEAEPR CGENGQVTGY GSAVNGGGGA VVGSYSVGNG NKSNCANLVR QSSSPAGFFN  180
GFGVMGEVGN YRVHNHAEAG SSAGGLSNHM NYSSCPSSSS MFMPSIPETD NESFGRSTTE  240
NGRLRNGNSA SCGEYEPEPS LHHDSWNQAP FNNSLKRDRD GHPKMYSDFS GLEDPNGETR  300
KKPLGLVHHM SLPRTTSEMA AGENYLQFGQ DTTARCQVRA KRGCATHPRS IAERMRRTRI  360
SEKMKKLQDL FPNMDKQTNT AEMLELAVEY IKNLQKQVQT LTDTRAKCVC SSKLQLTSPT  420
T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093536.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093536.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A2G9FZD6	1e-171	A0A2G9FZD6_9LAMI; Uncharacterized protein
STRING	Migut.B01333.1.p	1e-128	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-51	bHLH family protein