PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093603.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 251aa MW: 28355 Da PI: 6.9439

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093603.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.7	2.2e-24	65	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YA+ +GF+vr+ k+++ ++++ ++t++Cskeg ++++ ++ + +++etrtgC+a++ +++g+w+v+++++eHnHe+ap XP_011093603.1 65 LYCDYAQAMGFNVRRGKQYYFMGTKRVRSKTYCCSKEGVKDDKADT-NAVGYKKPETRTGCRAMISFACDDSGQWKVSRFVKEHNHEMAP 153 69*************************************99988.888999********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-21	65	153	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MENPGFDLEQ REAVSGDSDE EGVVRLRSGG EVVDVNEGQD DAHILELEKK LLEQVVYSEE 60 EAYMLYCDYA QAMGFNVRRG KQYYFMGTKR VRSKTYCCSK EGVKDDKADT NAVGYKKPET 120 RTGCRAMISF ACDDSGQWKV SRFVKEHNHE MAPPYAKPLV KSGQAILAAN VYGSGGALES 180 LSEHEKIREL SLQLAIAKNR AETFERQAAT YKRQLHMIVG HIEEHNQSLA KKLQKALHNV 240 KELESKDRLK S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093603.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093602.1	0.0	uncharacterized protein LOC105173527 isoform X1
TrEMBL	A0A4D8YWH6	1e-154	A0A4D8YWH6_SALSN; Uncharacterized protein
STRING	Migut.J01148.1.p	1e-167	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-28	FAR1 family protein