PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093630.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 243aa    MW: 26759.8 Da    PI: 5.3956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-1855105155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_011093630.1  55 PVYRGVRMRA-WGKWVTEIREPRK---KSRIWLGTFATPEMAARAHDVAALAIKG 105
                     68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1355105IPR001471AP2/ERF domain
SMARTSM003807.8E-3556119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3156114IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2056113IPR016177DNA-binding domain
PROSITE profilePS5103222.86656113IPR001471AP2/ERF domain
CDDcd000186.70E-3157114No hitNo description
PRINTSPR003674.2E-105768IPR001471AP2/ERF domain
PRINTSPR003674.2E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAEQPASEPE SSTTTGSGPK NLLKRARDSD DPEVGEGGKK RSRGRNSSSN DSKHPVYRGV  60
RMRAWGKWVT EIREPRKKSR IWLGTFATPE MAARAHDVAA LAIKGSSAIL NFPEISDLLP  120
RPVTCSPRDV QAAATKAAHM DHLNPRPSSP SMTSSSSSSL VSAATTTAPE ELGEIVELPE  180
LGSSYEWVDP TREELLFGQD VGWEWYNHPW LEGYSLFLEE NVVLEVEDVM SSNFEGLLSK  240
HHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-18521131072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743GKKRSRG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093630.11e-179ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD35e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2G9H8141e-100A0A2G9H814_9LAMI; Uncharacterized protein
STRINGMigut.K00522.1.p4e-73(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]