PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093763.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 279aa    MW: 30720.7 Da    PI: 8.6447
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
   XP_011093763.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllFARSNIDLKDKWRNL 56
                     79******************************99*9977***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.074161IPR017930Myb domain
SuperFamilySSF466893.95E-15258IPR009057Homeodomain-like
SMARTSM007172.6E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-13456IPR009057Homeodomain-like
PfamPF002493.1E-8556IPR001005SANT/Myb domain
CDDcd116601.43E-20656No hitNo description
SMARTSM005262.3E-13117182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.013119187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.8E-14119198IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-13120187IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.3E-10122180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LFARSNIDLK DKWRNLSVAS  60
GQGARDKSKT PKAKINPADT PATPLLTAQT STPVASSSQD PSTDVVMLDS SRPIPEGNNA  120
AKYNAMIYEA LSTLKEPNGS DSGAIANFIE QRHEVPQNFK RVLSSRLRRL VLQDKLEKVQ  180
NCYKIKRDAV LDTKTAAARQ KDSRPRPVPS IGYLGDTVEE AAISAAYKIA EAENKSFVAA  240
ESVKEAERVS TMAEDMESLL QFAMECFDQS ARGEILLMA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093763.10.0telomere repeat-binding factor 4
SwissprotF4I7L13e-68TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A2G9HZM40.0A0A2G9HZM4_9LAMI; Uncharacterized protein
STRINGMigut.L01522.1.p1e-149(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-61MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]