PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093785.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YA
Protein Properties Length: 303aa    MW: 33776.4 Da    PI: 7.9141
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.22.8e-33154210158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hAl+R RgsgGrF
  XP_011093785.1 154 DGPIYVNAKQYHGILRRRQTRAKLEAQNKL-VKTRKPYLHESRHQHALNRVRGSGGRF 210
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-37152213IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.201153213IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-28156210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-24156178IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860158178IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-24187210IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANLHEQHFP QTVSKNLSFE VDYSAQRDLE VKHISFQLQD QHSSSTESTG LSHQEQTAMG  60
KTSSQDQCAS SDSVHDDSYG KHGQDMKAAM FLCNPELSIN ASQPEISQPI VHFPYAYSDP  120
YLSGLFTPYG PHNMPQVMAS ASGRVPLPAD LPEDGPIYVN AKQYHGILRR RQTRAKLEAQ  180
NKLVKTRKPY LHESRHQHAL NRVRGSGGRF LSTKKSQQPE SLPPSQTTPD SFHFGNMLNS  240
SEHRFEANKH DTAPTTSRVP DSDSILQQPD GRFPSLPSHM AVPMQGSGSL VYNGNRHYAS  300
IVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-23156229477NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093785.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093783.10.0nuclear transcription factor Y subunit A-3 isoform X4
RefseqXP_011093784.10.0nuclear transcription factor Y subunit A-3 isoform X4
TrEMBLA0A2G9HRD31e-151A0A2G9HRD3_9LAMI; CCAAT-binding factor, subunit B (HAP2)
STRINGMigut.J00955.1.p1e-102(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-44nuclear factor Y, subunit A3