PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093817.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRF
Protein Properties Length: 357aa    MW: 40358.8 Da    PI: 9.2802
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.94.9e-2585128144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  XP_011093817.1  85 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 128
                     79***************************************986 PP
2QLQ58.81.6e-201852236
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    +FTa+Q+q+L++Q+l++Ky+++++PvPp+Ll+ i+
  XP_011093817.1 18 PFTATQWQELEHQALVFKYMVSGVPVPPDLLFTIR 52
                    8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.8E-121753IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-151852IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3681853IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94185129IPR014977WRC domain
PfamPF088793.3E-2186128IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMSGGGRSSS SSSSSRFPFT ATQWQELEHQ ALVFKYMVSG VPVPPDLLFT IRRSLDSSLS  60
SKFLIHQPQH IGWNSFHMGF GRKIDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGR  120
NRSRKPVEIL SQTTATATAP NAIPINNNTS ITNKNTQIIS PSSPVSYQPS EPHFLYPHFS  180
SSRPPGIGLS SQENTTNFFL EPNAPSRAPP KDCRNSSYGH GMKGETDEHA FFSEANSNSG  240
GSFDSSWKLA PLTVGSSSLP QMKHNANYSS DFQNGQRIQS LNSQQKHHDH YYYSTCDMAL  300
NLERDDQPKK VMHHFLDEWP PRDKDSWLTS EDKTPTHKTQ LSISTPNSMH DFFMTPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093817.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-59HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755192e-59HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093817.10.0growth-regulating factor 1 isoform X1
RefseqXP_020553366.10.0growth-regulating factor 1 isoform X2
TrEMBLA0A2G9I8091e-146A0A2G9I809_9LAMI; Uncharacterized protein
TrEMBLA0A2G9I8X11e-146A0A2G9I8X1_9LAMI; Uncharacterized protein
STRINGXP_009767378.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-59growth-regulating factor 5