PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011094004.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 130aa MW: 15069.2 Da PI: 6.1259

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011094004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105	6.2e-33	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++r++C ++Cvl +yfp e++++f+nv++lFG +n +k+l+++ e+ere++++sl+ eA++r ++Pv+G ++v ++l+ ++e++k+el+ XP_011094004.1 11 ACAACRYQRKRCDESCVLGRYFPLERAEDFENVQRLFGIQNAVKILNSVAENEREKTVESLILEARMRRENPVHGPIEVEMRLRAEMEKVKKELD 105 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e XP_011094004.1 106 MVKKE 110 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.517	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-32	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MNGEFDMPAG ACAACRYQRK RCDESCVLGR YFPLERAEDF ENVQRLFGIQ NAVKILNSVA 60 ENEREKTVES LILEARMRRE NPVHGPIEVE MRLRAEMEKV KKELDMVKKE LKFFKGDDDH 120 DHHQPGSSTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-22	9	111	8	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-22	9	111	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011094004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094004.1	8e-93	LOB domain-containing protein 27-like
TrEMBL	A0A1S4A3K4	6e-42	A0A1S4A3K4_TOBAC; LOB domain-containing protein 22-like
TrEMBL	A0A1U7YEQ3	6e-42	A0A1U7YEQ3_NICSY; LOB domain-containing protein 22-like
STRING	XP_009801618.1	1e-42	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	5e-26	LOB domain-containing protein 27