PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094110.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 240aa    MW: 27648.2 Da    PI: 4.533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-135294754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+eYI+ L
  XP_011094110.1 52 VSERNRRKKLNERLYALRAVVPNI-----TKMDKASIIRDAIEYIQAL 94
                    57*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1744110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.6534594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.62E-134899No hitNo description
Gene3DG3DSA:4.10.280.103.0E-1751110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1551100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-105294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEDFDDYKNY WETGMFLQTE ELDSYFDEHI SAYYDSSSPE GTQSSLASKN IVSERNRRKK  60
LNERLYALRA VVPNITKMDK ASIIRDAIEY IQALHDEERR IQAEISELES GRATNFEYEQ  120
EITTFCSKPK RTRMENEYDY SAPRLMSSPI EVLELRVSNM GEKTIVVSLT CSKRTDTMVK  180
LCEIFESLKL KVITANITAF SGRLLKTVFL EADEEEKEDL RLKIEAAIAA LSDPDSPMSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3788983e-33FQ378898.1 Vitis vinifera clone SS0AEB12YB22.
GenBankFQ3861393e-33FQ386139.1 Vitis vinifera clone SS0AEB2YO13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094110.11e-176transcription factor bHLH35
SwissprotQ2HIV92e-85BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2G9GQW61e-138A0A2G9GQW6_9LAMI; Uncharacterized protein
STRINGXP_009603227.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-89bHLH family protein