PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094403.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRF
Protein Properties Length: 397aa    MW: 43157.1 Da    PI: 8.5871
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.43.9e-26158201144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  XP_011094403.1 158 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 201
                     79***************************************987 PP
2QLQ43.87.8e-1677112136
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                     s+F+ aQ+q+L+ Q+l+++++++++ vPpeLl  ++
  XP_011094403.1  77 SYFSLAQWQELELQALIFRHMISGAAVPPELLHLVK 112
                     79*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-777113IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-1178111IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.95278113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.686158202IPR014977WRC domain
PfamPF088792.4E-22159201IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDFNLKQWRD ESEGEEQETP SPKLPRLLLH SHHPPASASA SSALPLFVPE PTTNLSAYSS  60
DNLSSTISVT KLPRMGSYFS LAQWQELELQ ALIFRHMISG AAVPPELLHL VKKSLITSSP  120
SSSSSSSPYY LCNSLHQYYP HYQSPLVQSG YWGRAAMDPE PGRCRRTDGK KWRCSRDVVA  180
GQKYCERHMH RGRNRSRKPV EIPTSTTTIT TTTYGGNGGG EALKTNHSAT EGVMATAVGG  240
GAPRFSLSEP SPSKDLLHLN PRTLDSIVET KSPFEAQNGG QGAGGRTLRH FFDDWPKSLH  300
ETESVSATNL SISMPGNPSS DFSLKLGTGN GDESRVVSGE RERPQLNWAT AWETGRVAPM  360
GGPLAEALRS SMSTSSPTSV LHRLPKSSTS EASYVSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0562877e-60KJ056287.1 Sesamum indicum clone TilSSR_27488 microsatellite Sesame_27488 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094403.10.0growth-regulating factor 3
TrEMBLA0A2G9HGY71e-154A0A2G9HGY7_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g03760.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-61growth-regulating factor 4