PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094421.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 308aa    MW: 33395.4 Da    PI: 4.5476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002281304123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C+++F +   L++H +  H
  XP_011094421.1 281 HSCKSCNRTFASEKALESHSKAkH 304
                     79*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.43E-5273303No hitNo description
PROSITE profilePS5015711.801281308IPR007087Zinc finger, C2H2
PROSITE patternPS000280283304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEFWGVEVKS GEPLKVTPGD GMVLHLSQAC LGELKKEKGN ESVCMFVNVN GKKLVLGTLF  60
SEKLPQQQFD LVFDRDFELS HNWKSGSVYF YGYRASNPFE EDELPEGESD ESDSEEEIPL  120
AIANNGNPES KAKPEKPVEA EKANAAKDKE SDAGKQKVKI VEPNKDVKPE EDEESSDDDL  180
MSEDDDDDDD SEDNDDEDDS DDESGESDEE TPKKAQASKK RPAGSATKTP VQGKKAKVTP  240
QKTDGKKAGG HVATPHPAKQ AGKTPANKPN QQTPKSGGGS HSCKSCNRTF ASEKALESHS  300
KAKHAGGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094421.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094421.10.0histone deacetylase HDT1
SwissprotQ6V9I61e-104HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A2G9G0301e-145A0A2G9G030_9LAMI; Histone deacetylase
STRINGMigut.L01752.1.p1e-131(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-35histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]