PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011094441.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 482aa MW: 54686 Da PI: 6.5579

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011094441.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.6	9e-25	113	213	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li ++ ++++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_011094441.1 113 KWTDNMVRLLIMVVYYIGDEVGSDQgndpaakkkgggvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGiSCRVVENQR 207 7******************998777888999999999******************************************99**** PP trihelix 81 yfdqle 86 ++d ++ XP_011094441.1 208 LLDTMD 213 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-21	111	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MESNAMPGGR YSNVQPGMLG LEMSLNHHIP PQQNPHQMPQ QQPHPNQPMV PSYGHHEADY 60 HSQAQQSAKQ GYPFSAKSKN QTLTLSDDDE PGFLAENSTD DGKRKMPSWQ RMKWTDNMVR 120 LLIMVVYYIG DEVGSDQGND PAAKKKGGGV LQKKGKWKSV SRAMMERGFY VSPQQCEDKF 180 NDLNKRYKRV NDILGKGISC RVVENQRLLD TMDHLTPKMK EEVKKLLNSK HLFFREMCAY 240 HNSCGHGSGA SGSGAAGFPG AAAEAVSQTQ LHLQQQRCLH SSENAPVVAN LNRGENEGSK 300 LVKGVSGEND DDQDDDDDQD DQDNDDQDED GDDEVIGAGS RIHDHGHEDE SNDTNDRSST 360 KRLRRGTFHS PLIQQLDAEI MTVVQDGAKS PFEKRLWMKK KLMGLEEQRV GIQCQSFELE 420 KQRLKWLKFR TKKEREIERE KLRNERLQLE NERMMLLIRQ KELELLDHHS PNKKSDPSSI 480 TG

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MESNAMPGGR YSNVQPGMLG LEMSLNHHIP PQQNPHQMPQ QQPHPNQPMV PSYGHHEADY  60
HSQAQQSAKQ GYPFSAKSKN QTLTLSDDDE PGFLAENSTD DGKRKMPSWQ RMKWTDNMVR  120
LLIMVVYYIG DEVGSDQGND PAAKKKGGGV LQKKGKWKSV SRAMMERGFY VSPQQCEDKF  180
NDLNKRYKRV NDILGKGISC RVVENQRLLD TMDHLTPKMK EEVKKLLNSK HLFFREMCAY  240
HNSCGHGSGA SGSGAAGFPG AAAEAVSQTQ LHLQQQRCLH SSENAPVVAN LNRGENEGSK  300
LVKGVSGEND DDQDDDDDQD DQDNDDQDED GDDEVIGAGS RIHDHGHEDE SNDTNDRSST  360
KRLRRGTFHS PLIQQLDAEI MTVVQDGAKS PFEKRLWMKK KLMGLEEQRV GIQCQSFELE  420
KQRLKWLKFR TKKEREIERE KLRNERLQLE NERMMLLIRQ KELELLDHHS PNKKSDPSSI  480
TG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011094441.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094441.1	0.0	uncharacterized protein LOC105174138
TrEMBL	A0A2Z7B9K1	0.0	A0A2Z7B9K1_9LAMI; Uncharacterized protein
STRING	cassava4.1_006702m	1e-178	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	7e-67	sequence-specific DNA binding transcription factors