PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011094569.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 161aa MW: 16403.5 Da PI: 8.0729

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011094569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.1	1.9e-40	36	136	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ r+rdP+yG+v++i++lqqq+ +l++el XP_011094569.1 36 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHIPVQKRLDAVVTICYEAQSRLRDPIYGCVAHIFALQQQVVNLQTEL 130 7*********************9989***************************************************************** PP DUF260 95 allkee 100 ++l+++ XP_011094569.1 131 SYLQAH 136 *99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.904	35	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-39	36	134	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MSTTAKVGGS STAAGGGGSS SGSGGGGGGG GGGGGPCGAC KFLRRKCVAG CIFAPYFDSE 60 QGAAHFAAVH KVFGASNVSK LLHHIPVQKR LDAVVTICYE AQSRLRDPIY GCVAHIFALQ 120 QQVVNLQTEL SYLQAHLAAL ELPTPPPATP QHQPQPCESE S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-38	32	137	7	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-38	32	137	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011094569.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094569.1	1e-113	LOB domain-containing protein 18
Swissprot	O81323	3e-63	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A2G9I206	2e-68	A0A2G9I206_9LAMI; Uncharacterized protein
STRING	XP_009795320.1	4e-68	(Nicotiana sylvestris)
STRING	XP_009604912.1	4e-68	(Nicotiana tomentosiformis)
STRING	GSMUA_Achr5P11330_001	2e-68	(Musa acuminata)
STRING	XP_010508173.1	3e-68	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	1e-60	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]