PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011094870.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 712aa MW: 81135.9 Da PI: 7.5778

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011094870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.2	2.1e-105	344	710	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d + a +lL+++++++sp gd +qR+a+yf+ +L+arla+++s++ kal ++t+ ++e l a+ +f sP+ k+s+ XP_011094870.1 344 LRTLLISCAQAVAADDPRSAAELLKQIRQHSSPLGDGNQRMAHYFADGLEARLAGTGSQIHKALVNKRTT---TEEYLRAHYTFIASSPFRKISN 435 6789**********************************************************999998...799999999********* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 +++N++I +++++r+HiiDf+i +G+QWp+++q +a R++gpp+lRiTg++ p++g +e++e tg+rLa++A+++++pfe+++ +a+++e+ XP_011094870.1 436 FATNKTIIIKAQKATRIHIIDFGIHYGFQWPTFIQRIAGREGGPPKLRITGIDFPQPGfrPAERIEDTGRRLAHYAKAFNMPFEYKA-IAQKWET 529 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++e+L+++++E +aV + ++ ++llde+v e+ +r+ vL+l+++++P ++++ + ++++ F++rf e l ++salfd+le+++pre+ er XP_011094870.1 530 IKIEDLKIEEDEFVAVTCLYRTKNLLDETVMAENsARTMVLNLIRKINPAIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLETNVPREKPER 624 **************************9998899****************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +Er ++gr++ nv r et+++W+ r ++aGF++vp++ ++++ ++ +++++ + + ++e+s++l+lgWk+r ++++S+W+ XP_011094870.1 625 VLIERDIFGRDALNVXXXX------RPETYKQWQVRNMRAGFSQVPFDREVMSMSRHKVKTFYHKDFVIDEDSQWLLLGWKGRIIYAMSCWQ 710 **********97655......567*******************************889***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.795	318	690	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.3E-103	344	710	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence Send to blast
MDAHFHGFLN SSSELQQGSQ FSMAEFPNRR IGYGPFSGIA HPDQGLVNGQ RNHISSFQEH 60 YIGGVNDNLL PNQPFSNGSI SSSSVDIEEY YQDECDFSDG ILRYIDKMLM EEDMEEKIHI 120 LQESLDLQAK EKSFYEVIGK KYPPSPQPES DRLSRCLESP DYYPYVNPRN STTSLNFVID 180 GLSGSPVSPL HMSDMYSESQ SVWNFKKGVK EASKFLPSEY KLSVNVDVNG LLGHDPEGAS 240 DRGAERSPSE VRGKKNGHAV ERDLEDERSS KLSATYLESN LPIEEFDKLL LHSMGEGEKK 300 FAAYRADLKN AMSKGVQQTE LLKGSNGRRG FGKKHTRKKE VIDLRTLLIS CAQAVAADDP 360 RSAAELLKQI RQHSSPLGDG NQRMAHYFAD GLEARLAGTG SQIHKALVNK RTTTEEYLRA 420 HYTFIASSPF RKISNFATNK TIIIKAQKAT RIHIIDFGIH YGFQWPTFIQ RIAGREGGPP 480 KLRITGIDFP QPGFRPAERI EDTGRRLAHY AKAFNMPFEY KAIAQKWETI KIEDLKIEED 540 EFVAVTCLYR TKNLLDETVM AENSARTMVL NLIRKINPAI FIHGIVNGAY SAPFFVTRFR 600 EVLFHFSALF DMLETNVPRE KPERVLIERD IFGRDALNVX XXXRPETYKQ WQVRNMRAGF 660 SQVPFDREVM SMSRHKVKTF YHKDFVIDED SQWLLLGWKG RIIYAMSCWQ PV

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence Send to blast

MDAHFHGFLN SSSELQQGSQ FSMAEFPNRR IGYGPFSGIA HPDQGLVNGQ RNHISSFQEH  60
YIGGVNDNLL PNQPFSNGSI SSSSVDIEEY YQDECDFSDG ILRYIDKMLM EEDMEEKIHI  120
LQESLDLQAK EKSFYEVIGK KYPPSPQPES DRLSRCLESP DYYPYVNPRN STTSLNFVID  180
GLSGSPVSPL HMSDMYSESQ SVWNFKKGVK EASKFLPSEY KLSVNVDVNG LLGHDPEGAS  240
DRGAERSPSE VRGKKNGHAV ERDLEDERSS KLSATYLESN LPIEEFDKLL LHSMGEGEKK  300
FAAYRADLKN AMSKGVQQTE LLKGSNGRRG FGKKHTRKKE VIDLRTLLIS CAQAVAADDP  360
RSAAELLKQI RQHSSPLGDG NQRMAHYFAD GLEARLAGTG SQIHKALVNK RTTTEEYLRA  420
HYTFIASSPF RKISNFATNK TIIIKAQKAT RIHIIDFGIH YGFQWPTFIQ RIAGREGGPP  480
KLRITGIDFP QPGFRPAERI EDTGRRLAHY AKAFNMPFEY KAIAQKWETI KIEDLKIEED  540
EFVAVTCLYR TKNLLDETVM AENSARTMVL NLIRKINPAI FIHGIVNGAY SAPFFVTRFR  600
EVLFHFSALF DMLETNVPRE KPERVLIERD IFGRDALNVX XXXRPETYKQ WQVRNMRAGF  660
SQVPFDREVM SMSRHKVKTF YHKDFVIDED SQWLLLGWKG RIIYAMSCWQ PV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-46	348	710	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011094870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553578.1	0.0	scarecrow-like protein 9 isoform X1
Refseq	XP_020553579.1	0.0	scarecrow-like protein 9 isoform X1
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2G9GCN1	0.0	A0A2G9GCN1_9LAMI; Uncharacterized protein
STRING	Migut.L01952.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein