PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095138.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 884aa    MW: 97296.9 Da    PI: 6.6247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-18309409199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_011095138.1 309 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 401
                     99**************************555567778***************9989999999***9.********************876.8888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l+++++++
  XP_011095138.1 402 LLMGFRKA 409
                     88888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-30301417IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19306409IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-22307408No hitNo description
PfamPF023626.5E-16309409IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152309410IPR003340B3 DNA binding domain
SMARTSM010191.9E-20309410IPR003340B3 DNA binding domain
PROSITE profilePS5105013.792563613IPR011124Zinc finger, CW-type
PfamPF074962.5E-10568610IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MEGGVCMNGM CASSNSLEWR KGWPLRSGGF ATLCDNCGTA YKQLVFCEMF HSDETGWREC  60
ASCGKRLHCG CIASSSLLEL LDTGGVSCKG CSKSSKLPST PLEEKHKACD LSTENGGDLN  120
FCRMAPAQSG DDAENDRQEH LPPPQTVDTI PRKQEDDFAG SGEIGYKLLP SFNQSSIGPS  180
KSCDALQETR SAKSVHESLV QTNLSISLSA SSNSNSLTGV IAEERQLSTA ICSFQQGCRP  240
RHLLPRLPNS ILAAGLETNS GTISQLRVAR PPVEGRVKNQ LLPRYWPRIT DQELQQISGD  300
SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPLRIQD VKGKEWVFQF  360
RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG KLLMGFRKAS NSISVQKESH  420
YSMNSGALQG ETLLGSAENL PLMSGYSGLL QSLKGSRNSS MNVYSGNINP KIIEKNVTGD  480
NLLAQPLLLP ERKRRNIGPK SKRLLIDGHD SLELRLSWEE VQEMLRPPPS TKPSTISVED  540
HEFEEFEEPP VFGKRSIFIV RLSGEHEQWT QCDSCFKWRK MPIDVLLPPK WTCRDNITDQ  600
ARSSCSAPDE LSPRELENLL RMNKDFTKRR VPTSLKPVHE NESQDLETLT NAAAVGGGMN  660
EPGASSVATT TKHPRHRPGC SCIVCIQPPS GKGKHKPTCL CNVCMTVKRR FKTLMMRKKK  720
RQSEREAEIA QRNQFASAAE EAEVDSVSHQ VSPQLVGSDN AKKSESEMLF RCQSDGQSQE  780
NAEILKGGLD LNCCPGREHT APSHVSMMSL LQEASLPLET YLRQNGLTSL VSEQQASAPL  840
VVPQAPGANM AQPQEDQGFS AFTPEHEEAS HELSEKDQKE NDTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-692874162131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1707718KRRFKTLMMRKK
2707720KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547459e-49AC254745.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30h11 map 10, complete sequence.
GenBankHG9754499e-49HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755229e-49HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095138.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553390.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553391.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G9HV310.0A0A2G9HV31_9LAMI; Uncharacterized protein
STRINGMigut.J00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]