PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095185.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Whirly
Protein Properties Length: 239aa    MW: 26544.3 Da    PI: 10.179
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly204.41.4e-63632001138
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal+ ++++ptf++l+sg  +++r+G ++l++ +a++erkydW+k+q+falsatev++l++l+sk+sceffhdp++ +sn+G+vrk+l+
  XP_011095185.1  63 SIYKGKAALSADPRLPTFSKLESGGYRVERRGVIMLTFWPAIGERKYDWDKRQVFALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKSLS 157
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                     ++ + dGsG+f++lsv n+++k+n++f+vPv+ aefav+r+++
  XP_011095185.1 158 IKAHVDGSGYFISLSVVNNILKTNDRFVVPVTTAEFAVMRTAF 200
                     *****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.5E-7551218IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.79E-6757236IPR009044ssDNA-binding transcriptional regulator
PfamPF085367.7E-6064198IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLKLSRLLLH SSRDPLSQKS LFREATGDFK LLRGITTQTV MSSAMQSSAR DGNSAVKIFA  60
PYSIYKGKAA LSADPRLPTF SKLESGGYRV ERRGVIMLTF WPAIGERKYD WDKRQVFALS  120
ATEVGSLISL GSKDSCEFFH DPSMLSSNAG QVRKSLSIKA HVDGSGYFIS LSVVNNILKT  180
NDRFVVPVTT AEFAVMRTAF TFALPHIMGW DQYTNQLPHG ANQSSPKAVH ELQSSEWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-100492162169StWhy2
3n1i_A1e-100492162169protein StWhy2
3n1j_A1e-100492162169Protein StWhy2
3n1k_A1e-100492162169protein StWhy2
3n1l_A1e-100492162169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095185.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095185.11e-178single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2
SwissprotD9J0341e-108WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2G9G9W41e-135A0A2G9G9W4_9LAMI; Uncharacterized protein
STRINGMigut.C01402.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-91WHIRLY 2