PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095244.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 354aa    MW: 39416.4 Da    PI: 8.7767
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.18.2e-54301571128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++
  XP_011095244.1  30 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTA 123
                     79****************************.88***************988899***************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  XP_011095244.1 124 gGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 157
                     77788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-6521188IPR003441NAC domain
PROSITE profilePS5100562.24930188IPR003441NAC domain
PfamPF023653.1E-2831157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MLFSFSHKFQ VPKQDMESTD SSTGSQQPQL PPGFRFHPTD EELVVHYLKK KAASAPLPVA  60
IIAEVDLYKF DPWELPAKAT FGEQEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV  120
LTAGGTQKVG VKKALVFYGG KPPKGIKTNW IMHEYRLADN KPNCKPPGCD KKGSLRLDDW  180
VLCRIYKKTN AQRPMTQERD DHINDMIGSV QPTLSLPLGQ HQKIHGIKAS SYGSLLESDD  240
NLYEGMMNNN ESMNSHLGSS ADPNLLQGKR TLPNLYWNEE GNANSPPTKR FLAESCDGSI  300
GRADETTTSS HHTILSQLPQ TPSLQQQAIL AAGALGDGVF RQQPYQVSGM NWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-75161939174NAC domain-containing protein 19
3swm_B7e-75161939174NAC domain-containing protein 19
3swm_C7e-75161939174NAC domain-containing protein 19
3swm_D7e-75161939174NAC domain-containing protein 19
3swp_A7e-75161939174NAC domain-containing protein 19
3swp_B7e-75161939174NAC domain-containing protein 19
3swp_C7e-75161939174NAC domain-containing protein 19
3swp_D7e-75161939174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095244.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095244.10.0NAC transcription factor 56-like
SwissprotQ9LD441e-123NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2G9HYQ00.0A0A2G9HYQ0_9LAMI; Uncharacterized protein
STRINGcassava4.1_022751m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-112NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]