PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011095585.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MYB

Protein Properties

Length: 184aa MW: 21230.8 Da PI: 7.6665

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011095585.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	7e-10	15	61	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rW+ eE +++ ++ +++ g +W++Ia+++g ++++ ++ ++ + XP_011095585.1 15 RWSWEENKRFENGLVEFPEGfpnRWEKIAARLG-TKSAAEVEQHYAVL 61 9******************************.********9765 PP
2	Myb_DNA-binding	46.4	9.4e-15	109	153	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+Wk+I+r++ ++R + q+ s+ qk+ XP_011095585.1 109 PWTEDEHRLFLLGLEKYGKGDWKSISRYVVLTRNPTQVASHAQKH 153 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.738	11	64	IPR017884	SANT domain
SMART	SM00717	1.7E-6	12	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.52E-11	15	69	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-8	15	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.97E-6	15	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-4	15	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.369	102	158	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	103	161	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.14E-16	103	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-14	105	157	IPR006447	Myb domain, plants
SMART	SM00717	2.3E-11	106	156	IPR001005	SANT/Myb domain
CDD	cd00167	5.60E-9	109	154	No hit	No description
Pfam	PF00249	6.7E-12	109	153	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MVNTSGCSLE TEISRWSWEE NKRFENGLVE FPEGFPNRWE KIAARLGTKS AAEVEQHYAV 60 LLDDVTAIEA GLIESPEYVE RDAPRSSEPQ KYPKSDKKPI GVQRKAGRPW TEDEHRLFLL 120 GLEKYGKGDW KSISRYVVLT RNPTQVASHA QKHFERQEKE EQNKKRRSIF DSSIAETSMT 180 KFAN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011095585.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095585.1	1e-135	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-44	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0K1SBI7	3e-96	A0A0K1SBI7_REHGL; MYB-related protein
STRING	Migut.M01627.1.p	8e-97	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14988	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	6e-47	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]