PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095942.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 24872 Da    PI: 7.5502
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.93.5e-25958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  XP_011095942.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                    79*********************************************965 PP
2K-box53.41.1e-188617610100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     e++ +   ++e++ Lk eie Lq+ +R + G + + ++l eL+ Le++Le  + ++Rs K+++++++i+ l++ke  lq +nk L++k+ee
  XP_011095942.1  86 EKQINMDPKEEISMLKLEIEILQKGLRYISGGGGGAMTLDELNVLEKHLEIWIYHVRSAKMDIMVQEIQLLKNKEGILQAANKHLQEKIEE 176
                     4444556689*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-28175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
CDDcd002651.10E-41275No hitNo description
PRINTSPR004044.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1987174IPR002487Transcription factor, K-box
PROSITE profilePS5129712.3790180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK  60
GSMQSLIERY MKCSGEVAAD DQEAKEKQIN MDPKEEISML KLEIEILQKG LRYISGGGGG  120
AMTLDELNVL EKHLEIWIYH VRSAKMDIMV QEIQLLKNKE GILQAANKHL QEKIEEQYGM  180
VEMGGMLTNI QYPAALTSTN LRSLQYPLTI PNETYDQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15192183MEF2 CHIMERA
6byy_B1e-15192183MEF2 CHIMERA
6byy_C1e-15192183MEF2 CHIMERA
6byy_D1e-15192183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095942.11e-161agamous-like MADS-box protein AGL12 isoform X1
SwissprotA2YQK94e-82MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G84e-82MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2G9H1P71e-118A0A2G9H1P7_9LAMI; MADS box transcription factor
STRINGMigut.C01339.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-79AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]