PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096128.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 412aa MW: 44721.3 Da PI: 9.9971

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096128.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	180	201	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cg++F r++ + H + H XP_011096128.1 180 CHKCGERFVRWEAVEEHHLSkH 201 *****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	180	201	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.62E-21	203	411	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.5E-7	231	388	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MPAVWFALKR SLQCKSEQGD VCEPNGRNLS NISTKKSSGG WSGCSRSIAN LKDVVIHGSK 60 RHTEKPPICS PRSIGSSELL NPITHEVMLN NSTCELKISA GSGFQGGGGD DAVSKFVGML 120 KPGTPGPGRF HVARGHRTGV LGSPIRRTSS SLSRRSSGFG AISTKPRSSF GVESHGALFC 180 HKCGERFVRW EAVEEHHLSK HAVTELVEGD SSRRIVEIIC RASCTRPDNH SGGVERILKV 240 HNMQKTLAQF EEYRELVKIK ASKLPKKHPR CLADGNELLR FHGSTVECSL GMKGSSSLCT 300 SDKCRVCRIL RYGFSTKKEL SEGVGVFTAS TSGRAFDSIQ VLDGNPSLRK ALIVCRVIAG 360 RVHRPVENIQ DIVGQSGFDS LAGKVGVHSS IEELYLLSPR ALLPCFVVIY KT

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MPAVWFALKR SLQCKSEQGD VCEPNGRNLS NISTKKSSGG WSGCSRSIAN LKDVVIHGSK  60
RHTEKPPICS PRSIGSSELL NPITHEVMLN NSTCELKISA GSGFQGGGGD DAVSKFVGML  120
KPGTPGPGRF HVARGHRTGV LGSPIRRTSS SLSRRSSGFG AISTKPRSSF GVESHGALFC  180
HKCGERFVRW EAVEEHHLSK HAVTELVEGD SSRRIVEIIC RASCTRPDNH SGGVERILKV  240
HNMQKTLAQF EEYRELVKIK ASKLPKKHPR CLADGNELLR FHGSTVECSL GMKGSSSLCT  300
SDKCRVCRIL RYGFSTKKEL SEGVGVFTAS TSGRAFDSIQ VLDGNPSLRK ALIVCRVIAG  360
RVHRPVENIQ DIVGQSGFDS LAGKVGVHSS IEELYLLSPR ALLPCFVVIY KT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096128.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096128.1	0.0	uncharacterized protein LOC105175392
TrEMBL	A0A2G9H9R1	0.0	A0A2G9H9R1_9LAMI; Uncharacterized protein
STRING	Migut.M01260.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-156	C2H2 family protein