PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096168.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 215aa    MW: 24284.4 Da    PI: 4.7354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-095092855
                    HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +ErrRR+++ ++  eLr+l+P       + ++Ka+i + A+ YI +Lq
  XP_011096168.1 50 AERRRRKKLSDRQLELRSLVPII-----TNMNKATIITDAITYIEELQ 92
                    7*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-1440107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.0274291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-104897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-75092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-1450107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-95096No hitNo description
PROSITE profilePS516718.627147215IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDCVKTEFDD LCITEDTNNA SRMDKRKHID AQDDDDDDQD RKYISKNLNA ERRRRKKLSD  60
RQLELRSLVP IITNMNKATI ITDAITYIEE LQKSVEDLTD QLHQMEATSV AEENPNFKEI  120
DAEQGMNKWG LAQPEVQVNH IGGTKYWIKI VFQKKRGGLT KLMEAISVLG FDITDTSITT  180
SDGAVLVTLS AEGIHGGLSE ADKIKKFLLE VIGNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15057ERRRRKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096168.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0732022e-58KJ073202.1 Sesamum indicum clone TilSSR_44403 microsatellite Sesame_44403 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554170.14e-96transcription factor DYT1
TrEMBLA0A2G9GB994e-96A0A2G9GB99_9LAMI; Uncharacterized protein
STRINGMigut.M01250.1.p1e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.15e-37bHLH family protein