PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096265.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 360aa MW: 39925.5 Da PI: 7.9612

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.3e-53	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+r++ky++g+r+nra++sgyWkatg+dk++l++ XP_011096265.1 16 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKYDPWELPSKASFGEQEWYFFSPRERKYPNGERPNRAATSGYWKATGTDKPILTA 109 79**************************.88***********988899**********************************998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kk Lvfy g+ pkg k++W+mheyrl XP_011096265.1 110 nGTQKIGVKKALVFYGGKPPKGIKSNWIMHEYRL 143 67788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-63	12	177	IPR003441	NAC domain
PROSITE profile	PS51005	61.835	16	177	IPR003441	NAC domain
Pfam	PF02365	6.1E-28	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MESTSSGGGS HHQPRLPPGF RFHPTDEELV VHYLKKKAAS APLPVAIIAE VDLYKYDPWE 60 LPSKASFGEQ EWYFFSPRER KYPNGERPNR AATSGYWKAT GTDKPILTAN GTQKIGVKKA 120 LVFYGGKPPK GIKSNWIMHE YRLVDKNSSA NKPPGISLTK KGSLQLDDWV LCRIFKKGNP 180 SSRPIEMDDS MEEMPVSMPT LSMDVGYQSS FPGPGKPSSH HDSRVLTFED DHGNNFFSGM 240 LPGSGSAIPS NIPISISPLA SSSSSKSDFP RNISSSSSQY WSPVPINGTS MLTSEANDDY 300 KNPSSNPAHD HHHDRNISFI SLLNQQYPQA FHQNSQLQVN SPEEGLLHHQ SYQFPTSHLQ

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MESTSSGGGS HHQPRLPPGF RFHPTDEELV VHYLKKKAAS APLPVAIIAE VDLYKYDPWE  60
LPSKASFGEQ EWYFFSPRER KYPNGERPNR AATSGYWKAT GTDKPILTAN GTQKIGVKKA  120
LVFYGGKPPK GIKSNWIMHE YRLVDKNSSA NKPPGISLTK KGSLQLDDWV LCRIFKKGNP  180
SSRPIEMDDS MEEMPVSMPT LSMDVGYQSS FPGPGKPSSH HDSRVLTFED DHGNNFFSGM  240
LPGSGSAIPS NIPISISPLA SSSSSKSDFP RNISSSSSQY WSPVPINGTS MLTSEANDDY  300
KNPSSNPAHD HHHDRNISFI SLLNQQYPQA FHQNSQLQVN SPEEGLLHHQ SYQFPTSHLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-72	13	177	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-72	13	177	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-72	13	177	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-72	13	177	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-72	13	177	17	168	NAC domain-containing protein 19
3swm_B	3e-72	13	177	17	168	NAC domain-containing protein 19
3swm_C	3e-72	13	177	17	168	NAC domain-containing protein 19
3swm_D	3e-72	13	177	17	168	NAC domain-containing protein 19
3swp_A	3e-72	13	177	17	168	NAC domain-containing protein 19
3swp_B	3e-72	13	177	17	168	NAC domain-containing protein 19
3swp_C	3e-72	13	177	17	168	NAC domain-containing protein 19
3swp_D	3e-72	13	177	17	168	NAC domain-containing protein 19
4dul_A	2e-72	13	177	14	165	NAC domain-containing protein 19
4dul_B	2e-72	13	177	14	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096265.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096265.1	0.0	NAC transcription factor 25
Swissprot	A0SPJ6	1e-100	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A2G9HQE1	1e-128	A0A2G9HQE1_9LAMI; Uncharacterized protein
STRING	Migut.M01170.1.p	1e-126	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-99	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]